- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Zinc finger, C3HC4 type (RING finger) [Interproscan].
Gene families : OG_01_0001141 (OrthoFinder) Phylogenetic Tree(s): OG0001141_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz04g24160.t1 | |
| Cluster | HCCA: Cluster_106 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| OT_12G00770.1 | No alias | Zinc finger, C3HC4 type (RING finger) [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_05G00530.1 | No alias | RING-type zinc-finger, LisH dimerisation motif [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0003s0290.1 | 32889184 | Zinc finger, C3HC4 RING-type [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|VRMN01000005.1_cds_KAA8493995.1_3859 | KAA8493995 | E3 ubiquitin-protein ligase | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003909 | DNA ligase activity | IEP | Enrichment |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Enrichment |
| MF | GO:0004725 | protein tyrosine phosphatase activity | IEP | Enrichment |
| MF | GO:0005384 | manganese ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005506 | iron ion binding | IEP | Enrichment |
| BP | GO:0006310 | DNA recombination | IEP | Enrichment |
| BP | GO:0006470 | protein dephosphorylation | IEP | Enrichment |
| BP | GO:0006873 | cellular ion homeostasis | IEP | Enrichment |
| BP | GO:0006875 | cellular metal ion homeostasis | IEP | Enrichment |
| MF | GO:0008270 | zinc ion binding | IEP | Enrichment |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
| BP | GO:0019725 | cellular homeostasis | IEP | Enrichment |
| BP | GO:0030003 | cellular cation homeostasis | IEP | Enrichment |
| BP | GO:0030026 | cellular manganese ion homeostasis | IEP | Enrichment |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
| BP | GO:0042592 | homeostatic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043169 | cation binding | IEP | Enrichment |
| MF | GO:0046872 | metal ion binding | IEP | Enrichment |
| MF | GO:0046914 | transition metal ion binding | IEP | Enrichment |
| MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0046916 | cellular transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0048878 | chemical homeostasis | IEP | Enrichment |
| BP | GO:0050801 | ion homeostasis | IEP | Enrichment |
| BP | GO:0055065 | metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055071 | manganese ion homeostasis | IEP | Enrichment |
| BP | GO:0055076 | transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055080 | cation homeostasis | IEP | Enrichment |
| BP | GO:0055082 | cellular chemical homeostasis | IEP | Enrichment |
| BP | GO:0098771 | inorganic ion homeostasis | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |