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  5. Cz04g21170.t1

Cz04g21170.t1


Description : 4Fe-4S single cluster domain; Radical SAM [Interproscan].


Gene families : OG_01_0000198 (OrthoFinder) Phylogenetic Tree(s): OG0000198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g21170.t1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cre01.g043000 30789590 No description available 0.03 OrthoFinder
PTI_08G00750.1 No alias Radical SAM [Interproscan]. 0.02 OrthoFinder
Sro414_g138300.1 Contig453.g6105 Probable dual-specificity RNA methyltransferase RlmN 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33242.1_3456 PRW33242 Ribosomal RNA large subunit methyltransferase N isoform A 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33243.1_3455 PRW33243 Ribosomal RNA large subunit methyltransferase N isoform B 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496335.1_64 KAA8496335 Dual-specificity RNA methyltransferase RlmN 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 163 331
No external refs found!