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  5. Cz04g12110.t1

Cz04g12110.t1


Description : Photosystem II Pbs27 [Interproscan].


Gene families : OG_01_0004065 (OrthoFinder) Phylogenetic Tree(s): OG0004065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g12110.t1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cre05.g243800 30783447, CPLD45 Photosynthesis.photophosphorylation.photosystem... 0.19 OrthoFinder
Dusal.0809s00001.1 33193197 Photosystem II Pbs27 [Interproscan]. 0.07 OrthoFinder
PTI_01G04750.1 No alias Photosystem II Pbs27 [Interproscan]. 0.03 OrthoFinder
TP03G02000.1 No alias Photosystem II Pbs27 [Interproscan]. 0.01 OrthoFinder
Vocar.0055s0028.1 32891625 Photosystem II Pbs27 [Interproscan]. 0.05 OrthoFinder
XM_002508021.1 MICPUN_91519, 91519 Photosystem II Pbs27 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001053.1_cds_GFH16800.1_11277 HaLaN_13297, GFH16800 Photosystem II Pbs27 [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32896.1_3724 PRW32896 Photosystem II repair PSB27-chloroplastic 0.1 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494044.1_3908 KAA8494044 Photosystem II lipoprotein Psb27 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034357 photosynthetic membrane IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
CC GO:0042651 thylakoid membrane IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 67 198
No external refs found!