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Description : Ribosomal protein L1/ribosomal biogenesis protein [Interproscan].
Gene families : OG_01_0000846 (OrthoFinder) Phylogenetic Tree(s): OG0000846_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz04g10270.t1 | |
| Cluster | HCCA: Cluster_113 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre06.g278090 | 30778992, MRPL1 | 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| XM_003054825.1 | MicpuC2_6958, 6958 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003058836.1 | MicpuC2_26898, 26898 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01003884.1_cds_GFH28452.1_22929 | HaLaN_26943, GFH28452 | Ribosomal protein | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497267.1_996 | KAA8497267 | 50S ribosomal protein L1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
| MF | GO:0004408 | holocytochrome-c synthase activity | IEP | Enrichment |
| MF | GO:0004843 | thiol-dependent deubiquitinase | IEP | Enrichment |
| CC | GO:0005739 | mitochondrion | IEP | Enrichment |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Enrichment |
| BP | GO:0006414 | translational elongation | IEP | Enrichment |
| BP | GO:0006694 | steroid biosynthetic process | IEP | Enrichment |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
| BP | GO:0008202 | steroid metabolic process | IEP | Enrichment |
| MF | GO:0008242 | omega peptidase activity | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016073 | snRNA metabolic process | IEP | Enrichment |
| BP | GO:0016125 | sterol metabolic process | IEP | Enrichment |
| BP | GO:0016126 | sterol biosynthetic process | IEP | Enrichment |
| BP | GO:0016180 | snRNA processing | IEP | Enrichment |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Enrichment |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Enrichment |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
| BP | GO:0034472 | snRNA 3'-end processing | IEP | Enrichment |
| BP | GO:0034477 | U6 snRNA 3'-end processing | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0043461 | proton-transporting ATP synthase complex assembly | IEP | Enrichment |
| BP | GO:0043628 | ncRNA 3'-end processing | IEP | Enrichment |
| MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
| BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Enrichment |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
| MF | GO:0101005 | deubiquitinase activity | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028364 | Ribosomal_L1/biogenesis | 98 | 292 |
| No external refs found! |