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  5. Cz04g10220.t1

Cz04g10220.t1


Description : Tetratricopeptide repeat 2; Tetratricopeptide repeat [Interproscan].


Gene families : OG_01_0000105 (OrthoFinder) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g10220.t1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.44 tig00000194_g14772.t1 No description available 0.03 OrthoFinder
Sro741_g195760.1 Contig2851.g22877 Tetratricopeptide repeat domain 0.01 OrthoFinder
Sro820_g207320.1 Contig34.g214 Stress-induced-phosphoprotein 1 0.02 OrthoFinder
Sro88_g046420.1 Contig265.g3300 Stress-induced-phosphoprotein 1 0.02 OrthoFinder
Transcript_contig_55576 55576 Tetratricopeptide repeat 2 [Interproscan]. 0.02 OrthoFinder
XM_002500337.1 MICPUN_56687, 56687 STI1 domain; Tetratricopeptide repeat 1;... 0.02 OrthoFinder
lcl|BLLF01003214.1_cds_GFH26712.1_21189 HaLaN_24906, GFH26712 TPR_REGION domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497788.1_6741 KAA8497788 Small glutamine-rich tetratricopeptide repeat-containing... 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498140.1_7093 KAA8498140 Small glutamine-rich tetratricopeptide repeat-containing... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013105 TPR_2 186 218
No external refs found!