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  5. Cz04g03140.t1

Cz04g03140.t1


Description : OCRE domain [Interproscan].


Gene families : OG_01_0002438 (OrthoFinder) Phylogenetic Tree(s): OG0002438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g03140.t1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Cre06.g299450 30779763 No description available 0.02 OrthoFinder
Transcript_contig_56192 56192 Hypothetical protein 0.01 OrthoFinder
Vocar.0001s0248.1 32885305 OCRE domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
InterPro domains Description Start Stop
IPR041591 OCRE 510 559
No external refs found!