Cz04g00020.t1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g00020.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cre07.g352650 30775322 No description available 0.04 OrthoFinder
Cre09.g391949 30781196 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
EOD21349 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0012s0273.1 32895004 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_003063178.1 MicpuC2_7420, 7420 Chorismate pyruvate-lyase Rv2949c-like [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45747.1_1280 PRW45747 Chorismate lyase isoform B 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495286.1_1284 KAA8495286 Splicing factor U2AF 50 kDa subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 1175 1241
No external refs found!