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Description : RNA recognition motif domain [Interproscan].
Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz04g00020.t1 | |
| Cluster | HCCA: Cluster_39 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre07.g352650 | 30775322 | No description available | 0.04 | OrthoFinder | |
| Cre09.g391949 | 30781196 | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder | |
| EOD21349 | No alias | Hypothetical protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD34357 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0012s0273.1 | 32895004 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003063178.1 | MicpuC2_7420, 7420 | Chorismate pyruvate-lyase Rv2949c-like [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000011.1_cds_PRW45747.1_1280 | PRW45747 | Chorismate lyase isoform B | 0.04 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495286.1_1284 | KAA8495286 | Splicing factor U2AF 50 kDa subunit | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Enrichment |
| BP | GO:0010035 | response to inorganic substance | IEP | Enrichment |
| BP | GO:0010038 | response to metal ion | IEP | Enrichment |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Enrichment |
| MF | GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity | IEP | Enrichment |
| BP | GO:0017038 | protein import | IEP | Enrichment |
| MF | GO:0017069 | snRNA binding | IEP | Enrichment |
| MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
| BP | GO:0019748 | secondary metabolic process | IEP | Enrichment |
| CC | GO:0019867 | outer membrane | IEP | Enrichment |
| MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
| BP | GO:0036260 | RNA capping | IEP | Enrichment |
| BP | GO:0042221 | response to chemical | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | Enrichment |
| BP | GO:0046937 | phytochelatin metabolic process | IEP | Enrichment |
| BP | GO:0046938 | phytochelatin biosynthetic process | IEP | Enrichment |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 1175 | 1241 |
| No external refs found! |