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  5. Cz03g40290.t1

Cz03g40290.t1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0003148 (OrthoFinder) Phylogenetic Tree(s): OG0003148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g40290.t1
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662852 30777781 No description available 0.03 OrthoFinder
Vocar.0039s0071.1 32897760 WD40 repeat; Pre-mRNA processing factor 4 (PRP4)-like... 0.02 OrthoFinder
XM_003063862.1 MicpuC2_2506, 2506 Pre-mRNA processing factor 4 (PRP4)-like; WD40 repeat... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 155 192
IPR001680 WD40_repeat 69 106
IPR001680 WD40_repeat 111 149
IPR001680 WD40_repeat 31 64
No external refs found!