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  5. Cz03g40140.t1

Cz03g40140.t1


Description : Chromo domain; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g40140.t1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz02g27010.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.06 OrthoFinder
Cz03g40120.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.03 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.06 OrthoFinder
Cz04g31300.t1 No alias Chromo domain [Interproscan]. 0.03 OrthoFinder
Cz06g22260.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz07g15240.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.05 OrthoFinder
Cz09g23090.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.05 OrthoFinder
Cz09g24190.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz13g09240.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.03 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.03 OrthoFinder
Cz15g18110.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.03 OrthoFinder
Cz19g08090.t1 No alias Integrase, catalytic core; Reverse transcriptase domain;... 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 9 81
IPR023780 Chromo_domain 270 323
No external refs found!