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  5. Cz03g38250.t1

Cz03g38250.t1


Description : Pumilio RNA-binding repeat [Interproscan].


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g38250.t1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cre17.g746647 30782867, PUF2 Pumilio homolog 3 OS=Arabidopsis thaliana 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 615 648
IPR001313 Pumilio_RNA-bd_rpt 544 571
IPR001313 Pumilio_RNA-bd_rpt 810 839
IPR001313 Pumilio_RNA-bd_rpt 728 752
IPR001313 Pumilio_RNA-bd_rpt 653 676
IPR001313 Pumilio_RNA-bd_rpt 578 601
IPR001313 Pumilio_RNA-bd_rpt 687 715
IPR001313 Pumilio_RNA-bd_rpt 760 792
No external refs found!