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  5. Cz03g38160.t1

Cz03g38160.t1


Description : C4-type zinc-finger of DNA polymerase delta; DNA-directed DNA polymerase, family B, multifunctional domain [Interproscan].


Gene families : OG_01_0001531 (OrthoFinder) Phylogenetic Tree(s): OG0001531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g38160.t1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001545.7 tig00001545_g9337.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder
Cre01.g015250 30788505 Cell cycle.interphase.DNA replication.elongation.DNA... 0.09 OrthoFinder
Dusal.0844s00002.1 33192065 DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
EOD17546 No alias Putative DNA polymerase POLD1 [Ensembl]. 0.06 OrthoFinder
EOD33882 No alias Putative DNA polymerase POLD1 [Ensembl]. 0.07 OrthoFinder
OT_02G03160.1 No alias C4-type zinc-finger of DNA polymerase delta;... 0.04 OrthoFinder
PTI_12G00450.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.04 OrthoFinder
Sro278_g106640.1 Contig1952.g16779 Polymerase delta catalytic subunit 0.05 OrthoFinder
Transcript_contig_55357 55357 C4-type zinc-finger of DNA polymerase delta;... 0.01 OrthoFinder
Transcript_contig_666 666 DNA-directed DNA polymerase, family B, exonuclease... 0.02 OrthoFinder
XM_002502424.1 MICPUN_97378, 97378 DNA-directed DNA polymerase, family B, exonuclease... 0.06 OrthoFinder
XM_003056923.1 MicpuC2_46825, 46825 DNA-directed DNA polymerase, family B, multifunctional... 0.04 OrthoFinder
lcl|BLLF01007866.1_cds_GFH33152.1_27629 HaLaN_32477, GFH33152 DNA polymerase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007051 spindle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0051225 spindle assembly IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
CC GO:0070652 HAUS complex IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 18 395
IPR025687 Znf-C4pol 434 506
No external refs found!