Cz03g28070.t1

Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0006531 (OrthoFinder) Phylogenetic Tree(s): OG0006531_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz03g28070.t1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cz04g32010.t1	No alias	Retrotransposon gag domain [Interproscan].	0.06	OrthoFinder
Cz06g10260.t1	No alias	Retrotransposon gag domain [Interproscan].	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	65	159
IPR001878	Znf_CCHC	211	227

External Links

No external refs found!