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  5. Cz03g23070.t1

Cz03g23070.t1


Description : Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0003856 (OrthoFinder) Phylogenetic Tree(s): OG0003856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g23070.t1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001466.9 tig00001466_g8787.t1 Protein degradation.26S proteasome.20S core... 0.01 OrthoFinder
Cre14.g619550 30776161, POA7 Protein degradation.26S proteasome.20S core... 0.09 OrthoFinder
Dusal.0179s00015.1 33190115 Proteasome, subunit alpha/beta; Proteasome... 0.03 OrthoFinder
EOD16649 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
EOD22067 No alias Proteasome, subunit alpha/beta; Proteasome... 0.05 OrthoFinder
PTI_26G01000.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.06 OrthoFinder
Sro1315_g262060.1 Contig2837.g22770 Proteasome subunit alpha type-3 (Fragment) 0.1 OrthoFinder
TP01G11230.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.07 OrthoFinder
Transcript_contig_56160 56160 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.01 OrthoFinder
Vocar.0026s0116.1 32892464 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.02 OrthoFinder
XM_002503515.1 MICPUN_108591, 108591 Proteasome, subunit alpha/beta; Proteasome... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59304.1_7323 PRW59304 20S proteasome alpha subunit G 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496150.1_2148 KAA8496150 Proteasome subunit alpha type-3 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Enrichment
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0030031 cell projection assembly IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0044782 cilium organization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0060271 cilium assembly IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Enrichment
BP GO:0120036 plasma membrane bounded cell projection organization IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 7 99
No external refs found!