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  5. Cz03g21050.t1

Cz03g21050.t1


Description : Ribosomal protein S13 [Interproscan].


Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g21050.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272950 30778811, RPS18 Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder
Dusal.0003s00026.1 33187489 Ribosomal protein S13 [Interproscan]. 0.05 OrthoFinder
EOD07550 No alias Ribosomal protein S13 [Interproscan]. 0.11 OrthoFinder
EOD24485 No alias Ribosomal protein S13 [Interproscan]. 0.11 OrthoFinder
OT_14G03080.1 No alias Ribosomal protein S13 [Interproscan]. 0.07 OrthoFinder
PTI_23G01020.1 No alias Ribosomal protein S13 [Interproscan]. 0.16 OrthoFinder
Sro2117_g315240.1 Contig3258.g25694 40S ribosomal protein S18 0.18 OrthoFinder
SymbC1.scaffold24401.1 24401.1 Ribosomal protein S13 [Interproscan]. 0.03 OrthoFinder
TP02G00280.1 No alias Ribosomal protein S13 [Interproscan]. 0.12 OrthoFinder
Vocar.0002s0337.1 32891179 Ribosomal protein S13 [Interproscan]. 0.09 OrthoFinder
XM_002505702.1 MICPUN_109369, 109369 Ribosomal protein S18 (RPS18) 0.16 OrthoFinder
XM_003063744.1 MicpuC2_49747, 49747 Ribosomal protein S18 (RPS18) 0.05 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56629.1_9755 PRW56629 40S ribosomal S18 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495014.1_3544 KAA8495014 40S ribosomal protein S18 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 2 75
No external refs found!