- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : tig00000984_g6004.t1
Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000984.27 | |
| Cluster | HCCA: Cluster_197 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre07.g349100 | 30774605 | RNA processing.RNA splicing.spliceosome... | 0.05 | OrthoFinder | |
| Cre08.g358563 | 30773457 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder | |
| Cre24.g755347 | 30782914 | RNA processing.RNA splicing.spliceosome... | 0.04 | OrthoFinder | |
| Cz12g28100.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| Cz14g08150.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| Cz16g14170.t1 | No alias | Helicase, C-terminal; DEAD/DEAH box helicase domain... | 0.04 | OrthoFinder | |
| Dusal.0244s00011.1 | 33186504 | Helicase, C-terminal; DEAD/DEAH box helicase domain... | 0.02 | OrthoFinder | |
| EOD10970 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
| EOD29635 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.02 | OrthoFinder | |
| EOD31583 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
| EOD37846 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.05 | OrthoFinder | |
| OT_04G02170.1 | No alias | S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... | 0.04 | OrthoFinder | |
| OT_14G00410.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.03 | OrthoFinder | |
| OT_16G00250.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
| PTI_07G04380.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| PTI_11G03860.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
| Sro1496_g277510.1 | Contig2419.g19801 | Splicing factor ATP-dependent RNA helicase | 0.01 | OrthoFinder | |
| Sro1676_g290440.1 | Contig3487.g27033 | Splicing factor ATP-dependent RNA helicase | 0.01 | OrthoFinder | |
| Transcript_contig_55707 | 55707 | Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... | 0.01 | OrthoFinder | |
| XM_002500528.1 | MICPUN_97165, 97165 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
| XM_002501417.1 | MICPUN_58037, 58037 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.04 | OrthoFinder | |
| lcl|BLLF01001160.1_cds_GFH17514.1_11991 | HaLaN_14169, GFH17514 | Helicase-associated domain [Interproscan]. | 0.04 | OrthoFinder | |
| lcl|BLLF01001168.1_cds_GFH17561.1_12038 | HaLaN_14223, GFH17561 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60688.1_4603 | PRW60688 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 0.02 | OrthoFinder | |
| lcl|LHPG02000004.1_cds_PRW59127.1_7530 | PRW59127 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.06 | OrthoFinder | |
| lcl|LHPG02000005.1_cds_PRW58375.1_7631 | PRW58375 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Enrichment |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | Enrichment |
| MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015923 | mannosidase activity | IEP | Enrichment |
| MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | Enrichment |
| CC | GO:0016020 | membrane | IEP | Enrichment |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0017069 | snRNA binding | IEP | Enrichment |
| MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034220 | ion transmembrane transport | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| MF | GO:0043169 | cation binding | IEP | Enrichment |
| MF | GO:0046872 | metal ion binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| BP | GO:0098655 | cation transmembrane transport | IEP | Enrichment |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Enrichment |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1902600 | proton transmembrane transport | IEP | Enrichment |
| No external refs found! |