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  5. Cz03g11200.t1

Cz03g11200.t1


Description : rRNA-processing protein Fcf1/Utp23 [Interproscan].


Gene families : OG_01_0003875 (OrthoFinder) Phylogenetic Tree(s): OG0003875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g11200.t1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001073.2 tig00001073_g6811.t1 No description available 0.02 OrthoFinder
Cre16.g679450 30777816 No description available 0.05 OrthoFinder
EOD06856 No alias rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.02 OrthoFinder
EOD39716 No alias rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.02 OrthoFinder
OT_06G02130.1 No alias rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.05 OrthoFinder
Sro1636_g287550.1 Contig3111.g24736 Processing protein FCF1 0.02 OrthoFinder
Vocar.0018s0090.1 32898574 rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.03 OrthoFinder
XM_002499722.1 MICPUN_78885, 78885 rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.03 OrthoFinder
XM_003062098.1 MicpuC2_44763, 44763 rRNA-processing protein Fcf1/Utp23 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58087.1_7664 PRW58087 RRNA-processing FCF1-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009264 deoxyribonucleotide catabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006984 Fcf1/Utp23 83 179
No external refs found!