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  5. Cz03g08190.t1

Cz03g08190.t1


Description : RecF/RecN/SMC, N-terminal [Interproscan].


Gene families : OG_01_0001598 (OrthoFinder) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g08190.t1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.145 tig00020553_g10636.t1 Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder
Cre15.g635800 30783526, SMC1 Structural maintenance of chromosomes protein 1... 0.02 OrthoFinder
EOD19992 No alias SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
EOD19993 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
OT_03G03810.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.03 OrthoFinder
PTI_02G06300.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
TP07G02860.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54202 54202 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.03 OrthoFinder
Transcript_contig_56203 56203 RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
XM_002499807.1 MICPUN_56550, 56550 Condensin complex component 0.04 OrthoFinder
XM_003055252.1 MicpuC2_50904, 50904 Condensin complex component 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 19 153
No external refs found!