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  5. Cz03g01290.t1

Cz03g01290.t1


Description : Domain of unknown function DUF2040 [Interproscan].


Gene families : OG_01_0005009 (OrthoFinder) Phylogenetic Tree(s): OG0005009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g01290.t1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Sro2191_g318360.1 Contig3818.g29319 Coiled-coil domain-containing protein 55 (DUF2040) 0.01 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44479.1_2268 PRW44479 Coiled-coil domain-containing isoform 1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019955 cytokine binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051254 positive regulation of RNA metabolic process IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR018612 DUF2040 68 182
No external refs found!