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  5. Cpa|evm.model.tig00000983.16

Cpa|evm.model.tig00000983.16 (tig00000983_g5907.t1)


Aliases : tig00000983_g5907.t1

Description : Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000983.16
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Dusal.0023s00044.1 33198053 Sde2, N-terminal ubiquitin domain [Interproscan]. 0.03 OrthoFinder
Dusal.0233s00001.1 33196201 Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
Dusal.0467s00013.1 33194478 Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
EOD04877 No alias Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
Sro867_g213220.1 Contig3090.g24652 Polyubiquitin (Fragment) 0.03 OrthoFinder
Transcript_contig_89335 89335 Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_89924 89924 Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001103.1_cds_GFH17141.1_11618 HaLaN_13705, GFH17141 Ribosomal protein S27A component of cytosolic 80S... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497057.1_786 KAA8497057 Ubiquitin-like protein 1-40S ribosomal protein S27a 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 6 75
No external refs found!