1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz02g41150.t1

Cz02g41150.t1


Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Integrase zinc-binding domain; Integrase, catalytic core; Retroviral aspartyl protease; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g41150.t1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.03 OrthoFinder
TP07G04220.1 No alias Reverse transcriptase domain; Reverse... 0.02 OrthoFinder
lcl|BLLF01001218.1_cds_GFH17889.1_12366 HaLaN_14611, GFH17889 Reverse transcriptase, RNase H-like domain; Reverse... 0.01 OrthoFinder
lcl|BLLF01009167.1_cds_GFH33640.1_28117 HaLaN_33038, GFH33640 RNA-directed DNA polymerase (reverse transcriptase) 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496123.1_2121 KAA8496123 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494620.1_3150 KAA8494620 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495185.1_3715 KAA8495185 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494005.1_3869 KAA8494005 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491220.1_5848 KAA8491220 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491010.1_9767 KAA8491010 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490790.1_5562 KAA8490790 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490538.1_5904 KAA8490538 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 816 926
IPR041577 RT_RNaseH_2 518 616
IPR000477 RT_dom 295 453
IPR041588 Integrase_H2C2 741 795
No external refs found!