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  5. Cz02g40250.t1

Cz02g40250.t1


Description : Coatomer, WD associated region; WD40 repeat [Interproscan].


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g40250.t1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.152 tig00000144_g9146.t1 Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder
Cre13.g565850 30784724, COPA1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Dusal.1106s00001.1 33203686 Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
Dusal.1106s00002.1 33203688 Coatomer, WD associated region [Interproscan]. 0.02 OrthoFinder
EOD07013 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.03 OrthoFinder
EOD15797 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.03 OrthoFinder
OT_04G01560.1 No alias Coatomer, WD associated region; Coatomer, alpha subunit,... 0.06 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.03 OrthoFinder
TP06G03960.1 No alias Coatomer, alpha subunit, C-terminal; Coatomer, WD... 0.03 OrthoFinder
Vocar.0028s0031.1 32895618 WD40 repeat; Coatomer, alpha subunit, C-terminal;... 0.04 OrthoFinder
XM_003057597.1 MicpuC2_45432, 45432 Coatomer, WD associated region; Coatomer, alpha subunit,... 0.02 OrthoFinder
lcl|BLLF01001654.1_cds_GFH20541.1_15018 HaLaN_17680, GFH20541 Coatomer subunit alpha 0.02 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22100.1_16577 HaLaN_19511, GFH22100 Coatomer subunit alpha 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491996.1_5004 KAA8491996 Coatomer subunit alpha 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 351 778
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 208 241
IPR001680 WD40_repeat 251 286
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 126 163
No external refs found!