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  5. Cz02g33150.t1

Cz02g33150.t1


Description : K Homology domain, type 2; Ribosomal protein S3, C-terminal [Interproscan].


Gene families : OG_01_0003293 (OrthoFinder) Phylogenetic Tree(s): OG0003293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g33150.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.41 tig00021462_g21604.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 OrthoFinder
Cre02.g102250 30785015, RPS3 Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 OrthoFinder
Dusal.0669s00001.1 33197930 Ribosomal protein S3, C-terminal; K Homology domain,... 0.06 OrthoFinder
EOD12304 No alias K Homology domain, type 2 [Interproscan]. 0.03 OrthoFinder
EOD31013 No alias Ribosomal protein S3, C-terminal; K Homology domain,... 0.1 OrthoFinder
OT_04G01280.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.15 OrthoFinder
PTI_04G00160.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.25 OrthoFinder
Sro694_g188530.1 Contig4437.g33306 40S ribosomal protein S3 0.34 OrthoFinder
TP04G07750.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.24 OrthoFinder
Vocar.0002s0314.1 32891162 K Homology domain, type 2; Ribosomal protein S3,... 0.16 OrthoFinder
XM_002508158.1 MICPUN_91459, 91459 Ribosomal protein S3, C-terminal; K Homology domain,... 0.23 OrthoFinder
XM_003057639.1 MicpuC2_26239, 26239 K Homology domain, type 2; Ribosomal protein S3,... 0.12 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493723.1_4485 KAA8493723 40S ribosomal protein S3-A 0.21 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!