Sequence Description Alias PCC hrr Cre06.g303700 30779468 0.932523831913 3 Cre02.g076300 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30785008, UPD2 0.925228082744 11 Cre12.g510800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30791685, CHLI2 0.92060419211 15 Cre12.g484200 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase 30791982, PPS2 0.919268772832 4 Cre16.g661350 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 30777960, RMT1 0.915442938927 5 Cre07.g328200 PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana 30774423, PSBP6 0.906438027925 11 Cre06.g294750 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG 30778727, CHLG 0.906357043524 18 Cre02.g073700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30785831, UPD3 0.904173735805 17 Cre10.g430150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein 30790156 0.901917699247 9 Cre16.g679669 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 30777907, CMS1 0.90177348692 10 Cre05.g242000 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component 30783498, CHLD 0.901558603513 19 Cre02.g105650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA2 protein 30785467 0.900006369691 12 Cre13.g566000 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.10-formyl-THF synthetase 30783932 0.899681511785 13 Cre06.g306300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30778583, CHLI1 0.896614561035 20 Cre03.g156600 Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana 30787650 0.896446510703 18 Cre05.g233305 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein 30783049 0.896413090064 16 Cre13.g576760 30784132 0.895564456085 17 Cre16.g663900 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase 30777054 0.893635949735 19 Cre11.g479750 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 30775504 0.888013154079 19 Cre01.g042800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 30789170, DVR1 0.887391761952 20 Cre05.g241450 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpFtsY component 30783185, FTSY 0.886127108069 21 Cre01.g050950 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.geranylgeranyl reductase ChlP 30789075 0.88562617455 22 Cre17.g702200 Protein translocation.chloroplast.outer envelope insertion system.AKR2 chaperone 30782338, ANK29 0.883585533536 23 Cre16.g681900 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component 30777143, SCY1 0.88294032068 24 Cre07.g313700 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase 30775172 0.880993456878 25 Cre03.g209841 30787009 0.879451393976 26 Cre12.g498550 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase 30791717 0.876434783112 27 Cre03.g199535 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP3 protein 30787325 0.873793032611 28 Cre02.g093450 Enzyme classification.EC_4 lyases.EC_4.1 carbon-carbon lyase(50.4.1 : 437.0) & Fructose-bisphosphate aldolase 4, cytosolic OS=Arabidopsis thaliana 30786142, FBA2 0.873093482323 29 Cre07.g335300 Lipid metabolism.fatty acid synthesis.plastidial Type II fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase activities.ketoacyl-ACP synthase II 30775292, KAS2 0.872191208423 30 Cre03.g158000 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamate-1-semialdehyde-2,1-aminomutase 30786587, GSA1 0.871865113969 31 Cre06.g300700 30779548 0.871744353732 32 Cre03.g145207 30787333, CPLD33 0.871690023725 33 Cre11.g475850 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PSA2 protein 30775881, ZNJ1 0.871434569799 34 Cre12.g524500 30793297, RMT2 0.870098280768 35 Cre10.g457650 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecE1 component 30790208 0.866919759301 36 Cre12.g542202 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. japonica 30793256 0.866490048363 37 Cre01.g046652 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase 30789622 0.863163427745 38 Cre17.g726450 30782107 0.861346033389 39 Cre02.g091050 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase 30786314, ALAD1 0.860941160912 40 Cre03.g174750 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 30787138, CYN26 0.85850499446 41 Cre03.g187450 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase 30787765, RPI1 0.858079941325 42 Cre08.g362900 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PPD1 protein 30773407, PSBP4 0.857791766891 43 Cre07.g334800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 30775099, FDX4 0.857727976221 44 Cre16.g656650 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 30776945 0.856334730344 45 Cre04.g213100 30791212, CGLD7 0.856029649067 46 Cre03.g158900 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E2 dihydrolipoamide acetyltransferase component 30787386, DLA2 0.855854025373 47 Cre17.g702500 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 30782205, TAB2 0.85556116763 48 Cre02.g092600 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase 30784921, CPX2 0.854464264879 49 Cre03.g155200 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase 30788064, CHM1 0.853302507232 50 Cre06.g251900 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 30780063, ALB3 0.852597233302 51 Cre09.g396300 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.protoporphyrinogen IX oxidase 30781023, PPX1 0.852452812025 52 Cre16.g651923 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CrtISO carotenoid isomerase 30776797 0.85112548515 53 Cre03.g146167 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HHL1 protein 30786848, TEF10a 0.847740907418 54 Cre16.g650050 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana 30777211 0.847126775008 55 Cre06.g286250 Solute transport.carrier-mediated transport.MC-type solute transporter 30778701 0.846187740265 56 Cre03.g194450 Phytohormones.abscisic acid.synthesis.NXD1 neoxanthin synthesis cofactor 30787751, CGL24 0.845380453483 57 Cre07.g328075 30775217 0.843440970672 58 Cre01.g037850 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.acetyl-CoA carboxylase regulator (BADC) 30788900, BCC2 0.842823252561 59 Cre05.g246800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor 30783214, GUN4 0.842555439737 60 Cre10.g422300 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) 30790817, PRX6 0.841370708581 61 Cre17.g696350 30782536 0.840162867048 62 Cre12.g508850 30793335 0.839347510898 63 Cre06.g280650 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein 30780166, CGL59 0.83698938371 64 Cre05.g245102 30783139 0.833926009349 65 Cre17.g732250 30782090 0.830924113844 66 Cre01.g014000 30788951 0.830261899204 67 Cre10.g439350 30789999 0.828044537681 68 Cre11.g467700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30776050, UPD1 0.828037964759 69 Cre10.g438650 Nucleotide metabolism.pyrimidines.phosphotransfers.uridylate kinase 30790114, ADK2 0.826659968987 70 Cre09.g393173 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30780340, ELI2 0.826530488706 71 Cre12.g534250 30791788 0.825148161766 72 Cre10.g435850 30789847, CPLD24 0.82355820572 73 Cre12.g546050 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.DXR 1-deoxy-D-xylulose 5-phosphate reductase 30793428, DXR1 0.82177262059 74 Cre12.g551950 Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana 30792631, CGL38 0.816823978359 75 Cre03.g183400 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PSA3 protein 30788009 0.816766595027 76 Cre10.g460050 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA reductase regulator protein (FLU) 30790814 0.816204788472 77 Cre09.g416200 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor 30781424, MBB1 0.815025773195 78 Cre02.g145050 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 30785791, CMK1 0.814318861652 79 Cre05.g248600 30783231 0.811738726776 80 Cre02.g074100 30785783 0.811436184789 81 Cre03.g171100 30787901 0.810505882973 82 Cre11.g476750 Ferredoxin--NADP reductase, chloroplastic OS=Chlamydomonas reinhardtii 30775686, FNR1 0.80991001916 83 Cre01.g015350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.protochlorophyllide oxidoreductase (POR) activities.light-dependent POR 30789577, POR1 0.808862119166 84 Cre09.g398289 1-acyl-sn-glycerol-3-phosphate acyltransferase CHLREDRAFT_174358 OS=Chlamydomonas reinhardtii 30781171 0.808671535438 85 Cre03.g194200 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E1 pyruvate dehydrogenase component.beta subunit 30787000, PDH2 0.807193808944 86 Cre03.g182150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein 30787302, TEF8 0.806798210087 87 Cre10.g429150 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate phosphoribosyltransferase 30790910, PRT1 0.806628537392 88 Cre03.g172000 Lipid metabolism.fatty acid synthesis.plastidial Type II fatty acid synthase (ptFAS) system.ketoacyl-ACP reductase 30786866 0.806436023029 89 Cre12.g514200 Protein HOTHEAD OS=Arabidopsis thaliana 30791786 0.804953742916 90 Cre14.g625000 30776446 0.804509227855 91 Cre12.g510050 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component 30792531, CTH1 0.802413623735 92 Cre03.g188700 Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana 30787522, PLP6 0.800005199712 93 Cre04.g231026 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component 30791302, SRP43 0.798460782373 94 Cre07.g325736 Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana 30774660 0.79819976914 95 Cre03.g206550 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase 30787385 0.798106620147 96 Cre13.g588100 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 30783969 0.797993068419 97 Cre01.g017350 30789562 0.79608266609 98 Cre08.g366050 30774169 0.795113640423 99 Cre12.g484000 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.carboxyltransferase beta subunit 30792400 0.794894524703 100