Sequence Description Alias PCC hrr Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase 30784500 0.844853739501 6 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana 30782523 0.842169661409 6 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30773689 0.812341987406 7 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 30782702 0.808830309183 9 Cre06.g283750 Coenzyme metabolism.prenylquinone synthesis.plastoquinone synthesis.HST homogentisate solanesyltransferase 30778858, HST1 0.808114931627 18 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30778123, ELI1 0.804050220059 6 Cre03.g144184 30787422 0.799538261681 9 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 30780556, TEF5 0.795022870528 9 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri 30785814 0.787757750689 9 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 30785153 0.783846781062 10 Cre16.g686400 30777095 0.781103519628 11 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30782442, FHL2 0.780290162023 12 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 30783939 0.780285919583 13 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 30780830 0.772159003006 14 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase 30777614 0.771482567784 15 Cre08.g358540 30773410 0.7626874449 16 Cre02.g088500 30784871 0.760274849185 17 Cre05.g246552 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30783180 0.758573353902 22 Cre12.g509650 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase 30793403, PDS1 0.7559849967 38 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 30787749, CPLD1 0.753994687616 20 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 30792828 0.748358242411 21 Cre07.g314150 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase 30775375, ZDS1 0.744361124171 79 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30791981, FHL1 0.740605414183 23 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein 30784232, THF1 0.735292674144 24 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease 30790201, SPP1 0.733394029965 25 Cre09.g397250 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta-7/delta-9 fatty acid desaturase 30780967 0.732202485131 26 Cre07.g339750 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase 30774410, HEM2 0.731551050484 31 Cre02.g079600 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 30785296 0.731509723101 53 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator 30778677 0.729198641039 29 Cre08.g372250 ABC transporter F family member 5 OS=Arabidopsis thaliana 30774146 0.72359560678 43 Cre13.g578650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein 30784444 0.723520736177 58 Cre14.g610850 30776623 0.722806029466 32 Cre08.g360850 30773941 0.721982756579 33 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component 30783113 0.719492842474 34 Cre03.g167051 Coenzyme metabolism.pyridoxalphosphate synthesis.pyridoxal 5-phosphate synthase complex.glutaminase component 30787759 0.718756392289 42 Cre01.g016150 30789476 0.717518097551 36 Cre12.g519300 30793372, TEF9 0.711441049309 37 Cre09.g395650 30780744 0.708256204988 39 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase 30773892 0.707059689208 40 Cre03.g176350 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 30786691, PLP5 0.705540069362 41 Cre03.g145567 30786601, CGL18 0.705389784985 42 Cre06.g273700 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein 30778394 0.704988211914 43 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase 30791351 0.700575809349 44 Cre16.g690350 30777415 0.699306622522 45 Cre16.g686350 30776871 0.699025155058 68 Cre03.g195200 30788075 0.698588743975 47 Cre02.g109950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein 30784850, HLIP 0.693688308716 48 Cre02.g110300 30784981, DNJ25 0.685277065284 49 Cre06.g281250 30779403, CFA1 0.683924350293 50 Cre10.g440450 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein 30790206, PSB28 0.682350521111 51 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana 30788730 0.680751736194 52 Cre10.g461900 Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana 30790205 0.679231952774 53 Cre07.g315150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein 30774709, RBD1 0.676687848763 54 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein 30779394, OHP1 0.674998963811 55 Cre06.g267600 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-e lycopene epsilon cyclase 30779398, LEC1 0.674756429101 56 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component 30784416 0.672041628777 57 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 30780099 0.670390415934 58 Cre09.g394325 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30780217, ELI3 0.667357544992 61 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein 30773702, LHCSR1 0.664604222729 62 Cre01.g038600 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.omega-3/omega-6 fatty acid desaturase 30789324, FAD7 0.663132261161 65 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 30788633 0.663042928268 65 Cre01.g037700 Acyl-lipid (7-3)-desaturase, chloroplastic OS=Chlamydomonas reinhardtii 30788905, FAD3 0.66133342449 74 Cre09.g407200 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 30780595 0.660259571161 67 Cre01.g002250 Serotonin N-acetyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica 30789180 0.655548781801 83 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 30791185 0.646203414854 72 Cre17.g733174 30782691 0.643657479213 76 Cre06.g290350 30778954 0.64340821521 77 Cre01.g055151 30789005 0.640266253895 97 Cre17.g729800 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 30781893 0.638082548133 81 Cre07.g320450 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30775051 0.636302422345 82 Cre08.g360801 30773927 0.633530204043 83 Cre08.g380000 30773887 0.625898184573 85 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 30784280 0.609108425996 95 Cre03.g181400 Coenzyme metabolism.tetrahydrofolate synthesis.p-aminobenzoate synthesis.aminodeoxychorismate synthase 30788288, ADC1 0.604879339813 100