Sequence Description Alias PCC hrr Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 30780830 0.855359669721 1 Cre08.g369150 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30773787 0.781659465242 17 Cre05.g246552 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30783180 0.781377771624 13 Cre02.g088500 30784871 0.779410118729 6 Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase 30784500 0.756660037954 23 Cre08.g372250 ABC transporter F family member 5 OS=Arabidopsis thaliana 30774146 0.755119887797 24 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana 30782523 0.753038772635 22 Cre16.g686400 30777095 0.752022002226 8 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 30787749, CPLD1 0.75171946123 9 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) 30776413 0.748358242411 21 Cre03.g176350 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 30786691, PLP5 0.746183836911 15 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30778123, ELI1 0.744069164523 22 Cre06.g286350 30778873 0.740720322309 27 Cre10.g461900 Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana 30790205 0.739296518383 14 Cre13.g570350 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30784007, AKC4 0.723534791067 38 Cre07.g339750 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase 30774410, HEM2 0.718405044357 35 Cre01.g002250 Serotonin N-acetyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica 30789180 0.717228758231 31 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 30780099 0.716916673075 18 Cre02.g095092 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PSY phytoene synthase 30785417, PSY1 0.715073888871 20 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30782442, FHL2 0.709871884165 29 Cre01.g007050 30789381, CPLD11 0.708444444764 25 Cre11.g477500 30775990 0.708352708327 74 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 30784280 0.707500342773 23 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase 30773892 0.707481574535 24 Cre16.g657800 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Pisum sativum 30777499, CCD3 0.705962182591 35 Cre17.g733174 30782691 0.702225859529 26 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein 30773702, LHCSR1 0.69770060994 27 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 30785153 0.695426137675 35 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase 30777614 0.693888841717 29 Cre10.g429800 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30790836, COQ8 0.693856167052 73 Cre16.g677800 30777487 0.692735457473 31 Cre12.g542100 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)(50.3.4 : 813.9) 30793513 0.691095939225 53 Cre03.g145567 30786601, CGL18 0.689065941335 33 Cre06.g281800 30779555 0.687109429264 34 Cre17.g696400 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpS adaptor component 30781653, CLPS1 0.684072464854 35 Cre10.g436300 30790076 0.682562624637 36 Cre02.g113550 30785672 0.682260749608 37 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana 30788730 0.680342161395 38 Cre10.g439000 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 30790389 0.676080995347 62 Cre12.g519300 30793372, TEF9 0.67524323212 58 Cre01.g038600 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.omega-3/omega-6 fatty acid desaturase 30789324, FAD7 0.67167222142 55 Cre09.g397250 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta-7/delta-9 fatty acid desaturase 30780967 0.670963453205 43 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein 30779394, OHP1 0.669362902453 46 Cre02.g115150 30786256 0.668504153793 47 Cre06.g261500 30778859 0.665078537358 48 Cre01.g044700 Glutathione S-transferase DHAR2 OS=Arabidopsis thaliana 30789649 0.664551776068 95 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri 30785814 0.662767667545 52 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 30782702 0.661609333373 51 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 30783939 0.657728756581 52 Cre03.g195850 Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. japonica 30787658 0.65722762821 63 Cre03.g182300 Cellular respiration.glycolysis.cytosolic glycolysis.phosphoglycerate mutase 30786944 0.656309754313 54 Cre03.g144184 30787422 0.655542972039 55 Cre04.g215400 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30791004, AKC3 0.647555778266 58 Cre07.g346672 30775138 0.646987156134 83 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 30780556, TEF5 0.646820559404 60 Cre16.g656600 30777628 0.645490763529 88 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein 30784232, THF1 0.644950934511 62 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease 30790201, SPP1 0.644623072393 63 Cre06.g267600 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-e lycopene epsilon cyclase 30779398, LEC1 0.643614467673 64 Cre13.g581850 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30784319 0.643136449639 65 Cre03.g197750 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase 30787350, GPX3 0.642372327 66 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30773689 0.637818501433 67 Cre03.g197650 30787526 0.637670430431 69 Cre17.g733162 30782479 0.637517040573 70 Cre09.g407200 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 30780595 0.635210782582 71 Cre17.g721700 Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana 30782709, CPLD44 0.633518099201 72 Cre01.g016150 30789476 0.633429019856 73 Cre06.g304400 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana 30779301, SOUL4 0.630206277179 83 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component 30783113 0.623635924736 76 Cre03.g195200 30788075 0.621973313388 100 Cre16.g664350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) 30776947 0.621063130463 81 Cre08.g358540 30773410 0.618622589048 86 Cre16.g659800 30778195 0.613893406067 87 Cre03.g188650 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana 30786773, PLP2 0.612045029312 88 Cre17.g715700 Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana 30782880 0.611336161489 98 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 30788633 0.607262673727 92 Cre03.g197850 30787274 0.604729776026 93 Cre08.g379550 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter 30773714 0.599149725842 98 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30791981, FHL1 0.596015857635 99