Sequence Description Alias PCC hrr Cpa|evm.model.tig00000403.78 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN8 regulatory component tig00000403_g338.t1 0.9445092277936743 2 Cpa|evm.model.tig00000319.25 Cytoskeleton.microfilament network.actin filament protein tig00000319_g24138.t1 0.9399683946855967 2 Cpa|evm.model.tig00000980.9 Intraflagellar transport protein 25 OS=Chlamydomonas reinhardtii tig00000980_g6133.t1 0.9242147855373698 4 Cpa|evm.model.tig00021123.23 tig00021123_g18507.t1 0.9146286029421645 4 Cpa|evm.model.tig00000944.21 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Magoh component tig00000944_g5943.t1 0.9139661740840614 7 Cpa|evm.model.tig00001284.12 Coenzyme metabolism.iron-sulfur cluster assembly machineries.mitochondrial ISC system.transfer phase.HSCB chaperone component tig00001284_g8011.t1 0.9125003278751544 10 Cpa|evm.model.tig00000144.51 Protein modification.disulfide bond formation.endoplasmic reticulum.thiol-disulfide oxidoreductase (ERO) tig00000144_g9043.t1 0.9110101220826955 7 Cpa|evm.model.tig00000718.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT4 regulatory component tig00000718_g3683.t1 0.909632928838465 41 Cpa|evm.model.tig00000615.75 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component tig00000615_g2605.t1 0.9091057862063493 18 Cpa|evm.model.tig00021348.86 Translocase of chloroplast 34 OS=Pisum sativum tig00021348_g20595.t1 0.9085472086811651 10 Cpa|evm.model.tig00021464.53 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase tig00021464_g21756.t1 0.9079666268092635 26 Cpa|evm.model.tig00000197.16 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.SKP1/ASK1 target protein binding component tig00000197_g15694.t1 0.9065993893432404 21 Cpa|evm.model.tig00020848.67 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.zeta subunit tig00020848_g14598.t1 0.9000267611905648 52 Cpa|evm.model.tig00000241.177 tig00000241_g21047.t1 0.8997281689512951 14 Cpa|evm.model.tig00022075.59 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.Arp2 component tig00022075_g23621.t1 0.8990872497967186 69 Cpa|evm.model.tig00021319.66 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC3/Tex1 component tig00021319_g20258.t1 0.8990013680814143 55 Cpa|evm.model.tig00020903.27 Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana tig00020903_g15093.t1 0.8984150686038951 42 Cpa|evm.model.tig00000863.20 Protein modification.peptide maturation.endomembrane system.SPC endoplasmic signal peptidase complex.SEC11 catalytic component tig00000863_g4975.t1 0.8975938750637197 20 Cpa|evm.model.tig00001085.16 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB maturation.UCH1 ubiquitin carboxyl-terminal hydrolase tig00001085_g6956.t1 0.8946016370637426 21 Cpa|evm.model.tig00000241.116 tig00000241_g20982.t1 0.894109800941036 22 Cpa|evm.model.tig00000704.39 Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana tig00000704_g3326.t1 0.8940703375503428 21 Cpa|evm.model.tig00000704.48 Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC3 component tig00000704_g3335.t1 0.8933615704024767 34 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase tig00020553_g10653.t1 0.8903032361013846 89 Cpa|evm.model.tig00020554.144 0.8899025077684286 24 Cpa|evm.model.tig00000073.32 Oligoribonuclease OS=Arabidopsis thaliana tig00000073_g1714.t1 0.888267936122429 25 Cpa|evm.model.tig00020553.154 tig00020553_g10645.t1 0.8879102616727769 61 Cpa|evm.model.tig00000980.5 tig00000980_g6130.t1 0.8876626276911026 50 Cpa|evm.model.tig00020675.94 tig00020675_g12677.t1 0.8873833646893786 28 Cpa|evm.model.tig00000042.86 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.SEC22-type protein tig00000042_g15484.t1 0.8870809871270292 29 Cpa|evm.model.tig00000836.8 Chromatin organisation.chromatin remodeling complexes.RVB helicase component tig00000836_g4692.t1 0.8864943808470916 30 Cpa|evm.model.tig00021464.27 tig00021464_g21733.t1 0.885278186913533 43 Cpa|evm.model.tig00021319.61 tig00021319_g20254.t1 0.8848741268367478 44 Cpa|evm.model.tig00020903.37 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.CIP29/Tho1 component tig00020903_g15104.t1 0.884483543275936 33 Cpa|evm.model.tig00020903.15 tig00020903_g15083.t1 0.8812218837548171 34 Cpa|evm.model.tig00000829.24 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component tig00000829_g4665.t1 0.8805274789450046 35 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase tig00001107_g7091.t1 0.8804483855442786 45 Cpa|evm.model.tig00001098.5 Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-1 component tig00001098_g7056.t1 0.8801625957326997 37 Cpa|evm.model.tig00020909.31 Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana tig00020909_g15353.t1 0.8801134509984705 38 Cpa|evm.model.tig00000076.52 tig00000076_g2352.t1 0.88000533878005 53 Cpa|evm.model.tig00001107.12 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component tig00001107_g7097.t1 0.8776859786368744 88 Cpa|evm.model.tig00021312.46 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B5 component tig00021312_g20080.t1 0.8776049202851013 41 Cpa|evm.model.tig00020780.62 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD2 component tig00020780_g13811.t1 0.8775414293665508 67 Cpa|evm.model.tig00000912.28 Probable protein S-acyltransferase 23 OS=Arabidopsis thaliana tig00000912_g5433.t1 0.8774503791604474 88 Cpa|evm.model.tig00021435.47 Calmodulin OS=Mougeotia scalaris tig00021435_g21427.t1 0.8773862916900494 53 Cpa|evm.model.tig00001600.14 tig00001600_g9399.t1 0.8771025275064179 48 Cpa|evm.model.tig00021348.85 tig00021348_g20594.t1 0.8766320526689633 46 Cpa|evm.model.tig00020553.158 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component tig00020553_g10649.t1 0.8751230865514188 47 Cpa|evm.model.tig00000704.42 tig00000704_g3329.t1 0.8751063879949086 48 Cpa|evm.model.tig00000383.54 Uncharacterized protein At2g34160 OS=Arabidopsis thaliana tig00000383_g24668.t1 0.8745978708982409 49 Cpa|evm.model.tig00001107.4 Deoxyhypusine synthase OS=Senecio vernalis tig00001107_g7092.t1 0.8741953049591525 58 Cpa|evm.model.tig00000857.6 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.P23 Hsp90-co-chaperone tig00000857_g4927.t1 0.8739310921913713 54 Cpa|evm.model.tig00020918.9 tig00020918_g15886.t1 0.8732451902516376 76 Cpa|evm.model.tig00000144.18 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qb-type SNARE components.GOS group protein tig00000144_g9007.t1 0.873007019690781 53 Cpa|evm.model.tig00021123.29 tig00021123_g18513.t1 0.8726403615988523 54 Cpa|evm.model.tig00001073.12 13 kDa deflagellation-inducible protein OS=Chlamydomonas reinhardtii tig00001073_g6820.t1 0.871826056163198 56 Cpa|evm.model.tig00001085.3 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component tig00001085_g6944.t1 0.8717842835390428 57 Cpa|evm.model.tig00000350.30 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor tig00000350_g24330.t1 0.871737353632037 58 Cpa|evm.model.tig00020553.157 Protein BTR1 OS=Arabidopsis thaliana tig00020553_g10648.t1 0.8716453856291531 59 Cpa|evm.model.tig00020684.43 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Bud31 component tig00020684_g12891.t1 0.870501240073488 60 Cpa|evm.model.tig00000455.19 Ras-related protein RABD2c OS=Arabidopsis thaliana tig00000455_g1007.t1 0.8700447046551739 61 Cpa|evm.model.tig00000704.52 Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana tig00000704_g3339.t1 0.8697775978337741 62 Cpa|evm.model.tig00001042.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT2 regulatory component tig00001042_g6583.t1 0.8697681859578047 80 Cpa|evm.model.tig00020554.142 NAP1-related protein 2 OS=Oryza sativa subsp. japonica tig00020554_g10921.t1 0.8678858745784178 65 Cpa|evm.model.tig00021571.12 Protein modification.N-linked glycosylation.DPMS dolichol-phosphate-mannose synthase complex.DPMS1 catalytic component tig00021571_g22362.t1 0.8675085721495169 71 Cpa|evm.model.tig00000615.68 Ras-related protein RABA4a OS=Arabidopsis thaliana tig00000615_g2598.t1 0.8655075576812116 95 Cpa|evm.model.tig00000217.26 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.NSE4 Kleisin-like bridging component tig00000217_g19159.t1 0.8654586754712785 69 Cpa|evm.model.tig00022075.46 26S proteasome regulatory subunit 6B homolog OS=Arabidopsis thaliana tig00022075_g23607.t1 0.8642758734326124 96 Cpa|evm.model.tig00021590.4 tig00021590_g22761.t1 0.8642139199680527 73 Cpa|evm.model.tig00021234.25 Cell cycle.interphase.DNA replication.initiation.GINS DNA replication fork maintenance complex.PSF1 component tig00021234_g19399.t1 0.864111133692969 74 Cpa|evm.model.tig00020848.77 tig00020848_g14607.t1 0.8637706425932755 75 Cpa|evm.model.tig00021357.2 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD4 component tig00021357_g20735.t1 0.862837779837613 91 Cpa|evm.model.tig00020553.139 tig00020553_g10629.t1 0.862044609466131 79 Cpa|evm.model.tig00000912.4 tig00000912_g5410.t1 0.8618074599124407 80 Cpa|evm.model.tig00020554.143 0.8612470178028049 81 Cpa|evm.model.tig00021319.60 tig00021319_g20253.t1 0.8612319348095104 82 Cpa|evm.model.tig00001130.30 Intraflagellar transport protein 43 OS=Chlamydomonas reinhardtii tig00001130_g7261.t1 0.8610813507472944 84 Cpa|evm.model.tig00021351.15 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Y14 component tig00021352_g20674.t1 0.860367179851069 86 Cpa|evm.model.tig00001542.22 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN11 regulatory component tig00001542_g9329.t1 0.8602905446317103 87 Cpa|evm.model.tig00020554.31 Enzyme classification.EC_5 isomerases.EC_5.1 racemase or epimerase(50.5.1 : 388.2) & GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana tig00020554_g10816.t1 0.8601604673517167 100 Cpa|evm.model.tig00000829.5 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase tig00000829_g4647.t1 0.8599403400093957 89 Cpa|evm.model.tig00021234.43 0.8588475373932485 92 Cpa|evm.model.tig00000319.24 tig00000319_g24137.t1 0.8587359504670443 93 Cpa|evm.model.tig00001374.6 tig00001374_g8498.t1 0.8584071503320045 94 Cpa|evm.model.tig00022075.57 Chaperone protein dnaJ 6 OS=Arabidopsis thaliana tig00022075_g23618.t1 0.8583492458159467 95 Cpa|evm.model.tig00021433.15 tig00021433_g21269.t1 0.8575902557304428 96 Cpa|evm.model.tig00021612.50 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component tig00021612_g22890.t1 0.857410897063481 97 Cpa|evm.model.tig00021352.44 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana tig00021352_g20712.t1 0.8569057963405912 98 Cpa|evm.model.tig00021612.51 tig00021612_g22891.t1 0.8568954913285844 99