Sequence Description Alias PCC hrr Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 30780556, TEF5 0.869716260441 2 Cre08.g358540 30773410 0.855991653737 2 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30782442, FHL2 0.846195144642 3 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30791981, FHL1 0.841802515637 4 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 30785153 0.831717384409 5 Cre06.g273700 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein 30778394 0.810559872862 6 Cre06.g283750 Coenzyme metabolism.prenylquinone synthesis.plastoquinone synthesis.HST homogentisate solanesyltransferase 30778858, HST1 0.802539148638 20 Cre10.g440450 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein 30790206, PSB28 0.799345445245 8 Cre13.g578650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein 30784444 0.791484558444 20 Cre07.g315150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein 30774709, RBD1 0.790613677618 10 Cre09.g395650 30780744 0.787957087004 11 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana 30782523 0.782596712789 15 Cre02.g109950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein 30784850, HLIP 0.779722261483 13 Cre03.g195200 30788075 0.77128590229 14 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 30780099 0.765653939514 15 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri 30785814 0.755443585313 16 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase 30777614 0.752964146172 17 Cre03.g144184 30787422 0.749007627501 18 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 30788633 0.743890367998 19 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 30783939 0.742262339161 21 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase 30791351 0.737668056313 21 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) 30776413 0.735292674144 24 Cre03.g201050 30786657, ZNJ2 0.730086942625 44 Cre14.g610850 30776623 0.729304666378 24 Cre02.g079600 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 30785296 0.729199152192 57 Cre02.g110300 30784981, DNJ25 0.725238813239 27 Cre12.g509650 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase 30793403, PDS1 0.719309125678 79 Cre12.g519300 30793372, TEF9 0.718342764726 29 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30773689 0.717948389529 30 Cre03.g197750 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase 30787350, GPX3 0.714223513811 31 Cre16.g662150 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component 30778025, CCB1 0.713042615826 97 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30778123, ELI1 0.710517378624 39 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component 30784416 0.70821053712 35 Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase 30784500 0.707072584208 36 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein 30773702, LHCSR1 0.705766484182 37 Cre06.g290350 30778954 0.698390444447 38 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 30782702 0.697567754344 39 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component 30783113 0.696365154341 40 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 30780830 0.690038603441 53 Cre03.g169900 30787002 0.68228253455 42 Cre17.g729800 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 30781893 0.681762098147 43 Cre01.g055151 30789005 0.679437892694 48 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase 30773892 0.675980090061 45 Cre02.g088500 30784871 0.674502288138 51 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 30784280 0.658765047611 51 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein 30779394, OHP1 0.658093335753 52 Cre01.g016150 30789476 0.648286290697 56 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 30792828 0.644950934511 62 Cre16.g690350 30777415 0.639613294595 61 Cre03.g205900 Polyamine metabolism.spermidine/spermine.synthesis.S-adenosyl methionine decarboxylase 30787393, DCA1 0.633796322762 64 Cre16.g686400 30777095 0.631550816788 65 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease 30790201, SPP1 0.626575557574 68 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 30787749, CPLD1 0.622734562734 69 Cre03.g145567 30786601, CGL18 0.618873976398 73 Cre08.g360850 30773941 0.612568446665 79 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 30791185 0.610767108081 80 Cre03.g206929 Protein modification.peptide maturation.plastid.EGY protease 30788225, RSE4 0.59320332944 93 Cre08.g379200 30773496, CPLD18 0.589469508205 96 Cre10.g448051 30789846 0.589046216761 97 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator 30778677 0.584874980023 100