Sequence Description Alias PCC hrr Cre05.g241450 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpFtsY component 30783185, FTSY 0.929966431125 2 Cre02.g073700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30785831, UPD3 0.917340636854 11 Cre12.g510800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30791685, CHLI2 0.910049018819 20 Cre07.g313700 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase 30775172 0.906970225629 9 Cre06.g294750 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG 30778727, CHLG 0.906391796888 17 Cre05.g242000 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component 30783498, CHLD 0.904233342209 16 Cre03.g156600 Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana 30787650 0.901883455001 15 Cre06.g306300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30778583, CHLI1 0.896595005624 21 Cre06.g303700 30779468 0.892534931672 18 Cre02.g076300 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30785008, UPD2 0.889895742951 31 Cre10.g430150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein 30790156 0.888514003133 11 Cre12.g524300 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 30792635, CGL71 0.888013154079 19 Cre02.g105650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA2 protein 30785467 0.884496422324 13 Cre03.g158000 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamate-1-semialdehyde-2,1-aminomutase 30786587, GSA1 0.881845086233 21 Cre06.g251900 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 30780063, ALB3 0.879897443321 15 Cre03.g199535 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP3 protein 30787325 0.877634447122 20 Cre16.g663900 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase 30777054 0.873711666127 27 Cre07.g328075 30775217 0.870916168812 18 Cre16.g681900 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component 30777143, SCY1 0.869317542153 21 Cre06.g300700 30779548 0.866164210429 24 Cre01.g050950 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.geranylgeranyl reductase ChlP 30789075 0.86488044601 28 Cre02.g092600 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase 30784921, CPX2 0.861671664026 22 Cre05.g246800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor 30783214, GUN4 0.860043550919 23 Cre12.g484200 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase 30791982, PPS2 0.858973346952 35 Cre17.g702200 Protein translocation.chloroplast.outer envelope insertion system.AKR2 chaperone 30782338, ANK29 0.858713644316 26 Cre13.g576760 30784132 0.858060136285 29 Cre06.g286250 Solute transport.carrier-mediated transport.MC-type solute transporter 30778701 0.857396894536 27 Cre10.g460050 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA reductase regulator protein (FLU) 30790814 0.854564625385 28 Cre01.g046652 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase 30789622 0.851347457937 35 Cre04.g231026 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component 30791302, SRP43 0.850653282362 30 Cre01.g015350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.protochlorophyllide oxidoreductase (POR) activities.light-dependent POR 30789577, POR1 0.849704955741 31 Cre03.g145207 30787333, CPLD33 0.847573584528 32 Cre07.g335300 Lipid metabolism.fatty acid synthesis.plastidial Type II fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase activities.ketoacyl-ACP synthase II 30775292, KAS2 0.847313340657 33 Cre12.g542202 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. japonica 30793256 0.845165066004 37 Cre12.g492350 30792781 0.843438097675 35 Cre02.g091050 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase 30786314, ALAD1 0.843308684789 36 Cre08.g377150 30773438 0.842909169112 37 Cre10.g457650 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecE1 component 30790208 0.842527363639 38 Cre07.g328200 PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana 30774423, PSBP6 0.841814957293 56 Cre02.g093450 Enzyme classification.EC_4 lyases.EC_4.1 carbon-carbon lyase(50.4.1 : 437.0) & Fructose-bisphosphate aldolase 4, cytosolic OS=Arabidopsis thaliana 30786142, FBA2 0.841412947675 40 Cre16.g679669 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 30777907, CMS1 0.840742724836 49 Cre16.g661350 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 30777960, RMT1 0.839684354861 42 Cre12.g498550 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase 30791717 0.835972562864 43 Cre07.g334800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 30775099, FDX4 0.83373024788 44 Cre05.g233305 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein 30783049 0.830477321827 48 Cre01.g042800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 30789170, DVR1 0.829317379365 47 Cre09.g396300 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.protoporphyrinogen IX oxidase 30781023, PPX1 0.820362381532 52 Cre09.g416200 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor 30781424, MBB1 0.81981870993 48 Cre16.g656650 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 30776945 0.815550217404 49 Cre12.g551950 Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana 30792631, CGL38 0.814867684115 50 Cre11.g467700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30776050, UPD1 0.811859750891 51 Cre03.g183400 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PSA3 protein 30788009 0.811269878916 52 Cre03.g209841 30787009 0.806809552949 53 Cre08.g369000 30773590 0.804850412702 54 Cre01.g037200 30789579 0.80411149162 55 Cre08.g375550 30773638 0.803642987641 56 Cre12.g524500 30793297, RMT2 0.799352063238 57 Cre01.g037850 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.acetyl-CoA carboxylase regulator (BADC) 30788900, BCC2 0.796954199122 58 Cre16.g674300 Protein translocation.chloroplast.outer envelope insertion system.AKR2 chaperone 30777930, FAP269 0.795698064683 59 Cre10.g422300 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) 30790817, PRX6 0.795291916869 60 Cre13.g566000 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.10-formyl-THF synthetase 30783932 0.794969698572 61 Cre03.g158900 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E2 dihydrolipoamide acetyltransferase component 30787386, DLA2 0.794715716632 66 Cre01.g045902 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component 30789449 0.790770096644 66 Cre03.g174750 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 30787138, CYN26 0.790562997026 91 Cre03.g171100 30787901 0.789003788061 65 Cre10.g439350 30789999 0.788399992628 66 Cre06.g280650 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein 30780166, CGL59 0.787458037575 67 Cre09.g389393 30780814 0.785486708105 68 Cre03.g146167 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HHL1 protein 30786848, TEF10a 0.783314070958 75 Cre03.g155200 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase 30788064, CHM1 0.782864459872 70 Cre03.g195650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS10 component 30787464, PRPS10 0.777884149557 72 Cre04.g213100 30791212, CGLD7 0.776786123239 74 Cre09.g398289 1-acyl-sn-glycerol-3-phosphate acyltransferase CHLREDRAFT_174358 OS=Chlamydomonas reinhardtii 30781171 0.776211981307 75 Cre16.g650050 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana 30777211 0.77570189312 76 Cre03.g187450 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase 30787765, RPI1 0.775339038259 77 Cre08.g362900 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PPD1 protein 30773407, PSBP4 0.774187099781 78 Cre03.g194450 Phytohormones.abscisic acid.synthesis.NXD1 neoxanthin synthesis cofactor 30787751, CGL24 0.770873698851 79 Cre06.g284650 30778940 0.768771572261 80 Cre08.g371650 Protein translocation.chloroplast.thylakoid membrane Tat translocation system.Hcf106 component 30773883, TAT2 0.768595040467 81 Cre10.g435850 30789847, CPLD24 0.76814621064 82 Cre12.g517900 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component 30792082, SCA1 0.765319831931 83 Cre01.g014000 30788951 0.76518949107 84 Cre09.g393173 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30780340, ELI2 0.763812270606 91 Cre10.g454250 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst 30790083 0.762702601136 87 Cre10.g438650 Nucleotide metabolism.pyrimidines.phosphotransfers.uridylate kinase 30790114, ADK2 0.762010335483 88 Cre03.g194200 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E1 pyruvate dehydrogenase component.beta subunit 30787000, PDH2 0.760824549005 89 Cre16.g651923 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CrtISO carotenoid isomerase 30776797 0.759121595576 94 Cre03.g206550 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase 30787385 0.756731440004 91 Cre12.g494750 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS20 component 30791934, PRPS20 0.756634728821 92 Cre01.g017300 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component 30788961, PRPS21 0.755894565944 93 Cre12.g508850 30793335 0.753469217068 95 Cre17.g696350 30782536 0.753114956225 96 Cre16.g673729 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp10 Hsp60-co-chaperone 30777705, CPN11 0.752589004008 97 Cre13.g581650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component 30784593, PRPL7 0.749032750131 99 Cre06.g272850 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component 30779201, PRPL10 0.748922327567 100