Sequence Description Alias PCC hrr Cre16.g663900 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase 30777054 0.957312544493 2 Cre06.g306300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30778583, CHLI1 0.955884861959 3 Cre12.g510800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component 30791685, CHLI2 0.953376163821 5 Cre05.g242000 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component 30783498, CHLD 0.949795863405 4 Cre06.g303700 30779468 0.948771909521 5 Cre06.g294750 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG 30778727, CHLG 0.942769769317 6 Cre02.g073700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30785831, UPD3 0.938546206853 7 Cre07.g328200 PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana 30774423, PSBP6 0.938281362356 8 Cre16.g679669 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 30777907, CMS1 0.931031706477 9 Cre01.g050950 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.geranylgeranyl reductase ChlP 30789075 0.929762224738 10 Cre12.g524300 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 30792635, CGL71 0.925228082744 11 Cre03.g156600 Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana 30787650 0.924433843326 12 Cre01.g046652 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase 30789622 0.917375047931 13 Cre01.g042800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 30789170, DVR1 0.916712048009 14 Cre11.g467700 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 30776050, UPD1 0.914633858423 15 Cre07.g313700 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase 30775172 0.911950228254 16 Cre03.g158000 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamate-1-semialdehyde-2,1-aminomutase 30786587, GSA1 0.910977717399 17 Cre12.g484200 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase 30791982, PPS2 0.910523402845 18 Cre12.g498550 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase 30791717 0.907722045379 19 Cre12.g542202 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. japonica 30793256 0.905852604224 20 Cre03.g174750 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 30787138, CYN26 0.905599570006 21 Cre02.g091050 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase 30786314, ALAD1 0.901989918595 22 Cre09.g396300 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.protoporphyrinogen IX oxidase 30781023, PPX1 0.90120310121 23 Cre06.g251900 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 30780063, ALB3 0.900440363439 24 Cre06.g300700 30779548 0.90023892773 25 Cre13.g576760 30784132 0.899806818404 26 Cre03.g199535 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP3 protein 30787325 0.895967282746 27 Cre05.g233305 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein 30783049 0.893974087562 28 Cre08.g362900 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PPD1 protein 30773407, PSBP4 0.891624039648 29 Cre16.g681900 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component 30777143, SCY1 0.89124187201 30 Cre11.g479750 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 30775504 0.889895742951 31 Cre03.g209841 30787009 0.886138871745 32 Cre03.g145207 30787333, CPLD33 0.885235896149 33 Cre10.g422300 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) 30790817, PRX6 0.885172111117 34 Cre05.g241450 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpFtsY component 30783185, FTSY 0.885014659612 35 Cre03.g158900 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E2 dihydrolipoamide acetyltransferase component 30787386, DLA2 0.88271537101 36 Cre16.g656650 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 30776945 0.880966590116 37 Cre01.g015350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.protochlorophyllide oxidoreductase (POR) activities.light-dependent POR 30789577, POR1 0.879895839143 38 Cre17.g702200 Protein translocation.chloroplast.outer envelope insertion system.AKR2 chaperone 30782338, ANK29 0.878218950394 39 Cre17.g696350 30782536 0.876062347244 40 Cre10.g430150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein 30790156 0.875891796099 41 Cre12.g534250 30791788 0.874621879813 42 Cre03.g187450 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase 30787765, RPI1 0.873550413326 43 Cre02.g105650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA2 protein 30785467 0.868915880977 44 Cre16.g661350 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 30777960, RMT1 0.867385782303 45 Cre07.g335300 Lipid metabolism.fatty acid synthesis.plastidial Type II fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase activities.ketoacyl-ACP synthase II 30775292, KAS2 0.866445538004 46 Cre05.g246800 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor 30783214, GUN4 0.865496420169 47 Cre03.g194450 Phytohormones.abscisic acid.synthesis.NXD1 neoxanthin synthesis cofactor 30787751, CGL24 0.860464139984 48 Cre13.g566000 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.10-formyl-THF synthetase 30783932 0.859892085541 49 Cre16.g650050 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana 30777211 0.858407572514 50 Cre02.g093450 Enzyme classification.EC_4 lyases.EC_4.1 carbon-carbon lyase(50.4.1 : 437.0) & Fructose-bisphosphate aldolase 4, cytosolic OS=Arabidopsis thaliana 30786142, FBA2 0.85301313785 51 Cre07.g328075 30775217 0.852192846242 52 Cre10.g457650 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecE1 component 30790208 0.850993023967 53 Cre17.g732250 30782090 0.848729739906 54 Cre10.g460050 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA reductase regulator protein (FLU) 30790814 0.848473137534 55 Cre04.g213100 30791212, CGLD7 0.846835360195 56 Cre12.g551950 Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana 30792631, CGL38 0.845216120044 57 Cre07.g334800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 30775099, FDX4 0.84512277712 58 Cre02.g092600 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase 30784921, CPX2 0.842481582667 59 Cre12.g510400 30793179, RBD4 0.836828623901 60 Cre03.g146167 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HHL1 protein 30786848, TEF10a 0.83582156942 61 Cre11.g467770 Cellular respiration.glycolysis.cytosolic glycolysis.phosphoglycerate kinase 30775977, PGK1 0.834385891224 62 Cre11.g476750 Ferredoxin--NADP reductase, chloroplastic OS=Chlamydomonas reinhardtii 30775686, FNR1 0.831713585679 63 Cre03.g183400 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PSA3 protein 30788009 0.83044487636 64 Cre06.g286250 Solute transport.carrier-mediated transport.MC-type solute transporter 30778701 0.829822025161 65 Cre09.g393173 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30780340, ELI2 0.828184433034 66 Cre17.g726450 30782107 0.826537091711 67 Cre02.g145050 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 30785791, CMK1 0.825964910005 68 Cre12.g524500 30793297, RMT2 0.822988830694 69 Cre12.g558900 Cytochrome b6-f complex subunit petO, chloroplastic OS=Chlamydomonas reinhardtii 30793117, PETO 0.817556593671 70 Cre14.g625000 30776446 0.814056455319 71 Cre01.g017350 30789562 0.813426378184 72 Cre10.g429150 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate phosphoribosyltransferase 30790910, PRT1 0.812725147426 73 Cre08.g369000 30773590 0.812360023533 74 Cre02.g120100 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit 30785539, RBCS1 0.812007026547 75 Cre12.g510050 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component 30792531, CTH1 0.81146386833 76 Cre03.g155200 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase 30788064, CHM1 0.810981386829 77 Cre07.g325736 Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana 30774660 0.810846216945 78 Cre03.g182150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein 30787302, TEF8 0.810379659909 79 Cre12.g492350 30792781 0.810112586366 80 Cre09.g389393 30780814 0.809690920725 81 Cre11.g475850 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PSA2 protein 30775881, ZNJ1 0.807282154706 82 Cre03.g172000 Lipid metabolism.fatty acid synthesis.plastidial Type II fatty acid synthase (ptFAS) system.ketoacyl-ACP reductase 30786866 0.806095842788 83 Cre10.g435850 30789847, CPLD24 0.805882200055 84 Cre14.g609300 30776640 0.805694543035 85 Cre16.g674300 Protein translocation.chloroplast.outer envelope insertion system.AKR2 chaperone 30777930, FAP269 0.805447459613 86 Cre12.g514200 Protein HOTHEAD OS=Arabidopsis thaliana 30791786 0.804700758715 87 Cre12.g508850 30793335 0.804543765585 88 Cre01.g037850 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.acetyl-CoA carboxylase regulator (BADC) 30788900, BCC2 0.802246691023 89 Cre04.g231026 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component 30791302, SRP43 0.80166233169 90 Cre03.g171100 30787901 0.799300969508 91 Cre03.g194200 Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E1 pyruvate dehydrogenase component.beta subunit 30787000, PDH2 0.799105525128 92 Cre01.g014000 30788951 0.79750748603 93 Cre06.g280650 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein 30780166, CGL59 0.796708496524 94 Cre10.g438650 Nucleotide metabolism.pyrimidines.phosphotransfers.uridylate kinase 30790114, ADK2 0.794357447066 95 Cre16.g651923 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CrtISO carotenoid isomerase 30776797 0.792782809752 96 Cre02.g074100 30785783 0.792313709611 97 Cre09.g416200 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor 30781424, MBB1 0.792244787907 98 Cre12.g509050 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PPL1 protein 30791680, PSBP3 0.790185289591 99 Cre01.g045902 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component 30789449 0.788922585814 100