Sequence Description Alias PCC hrr Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase 30784500 0.854706235385 3 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase 30773892 0.846167645653 2 Cre08.g369150 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30773787 0.837268174809 5 Cre02.g081400 Amino acid metabolism.degradation.branched-chain amino acid.BCAT branched-chain aminotransferase 30786372, BCA1 0.829474058021 4 Cre08.g372250 ABC transporter F family member 5 OS=Arabidopsis thaliana 30774146 0.827147714428 5 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana 30788730 0.81696468223 6 Cre07.g339750 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase 30774410, HEM2 0.815283719228 7 Cre09.g393950 Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic OS=Arabidopsis thaliana 30780473 0.809617773701 8 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease 30790201, SPP1 0.809589637725 9 Cre09.g407200 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 30780595 0.805293616599 10 Cre13.g564900 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter 30784450, MRP3 0.805257324656 11 Cre08.g360801 30773927 0.801609827908 12 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 30792828 0.781377771624 13 Cre10.g429800 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30790836, COQ8 0.775507449895 14 Cre02.g084950 Nucleotide metabolism.purines.phosphotransfers.guanylate kinase 30785412 0.772385423023 17 Cre03.g145567 30786601, CGL18 0.766820513859 16 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30782442, FHL2 0.766757537691 17 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator 30778677 0.765867983681 18 Cre02.g095092 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PSY phytoene synthase 30785417, PSY1 0.765250682645 19 Cre09.g407801 Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana 30780856 0.762898748244 30 Cre06.g269801 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30779971 0.759028093088 21 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) 30776413 0.758573353902 22 Cre03.g158500 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30787514 0.757826205654 23 Cre04.g221550 30791030 0.757537736482 24 Cre16.g690350 30777415 0.755548838458 25 Cre08.g381516 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 30773746 0.754491551036 26 Cre08.g379550 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter 30773714 0.750562816436 27 Cre16.g657800 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Pisum sativum 30777499, CCD3 0.740090894518 28 Cre13.g581850 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30784319 0.73836285339 29 Cre17.g715700 Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana 30782880 0.734774588798 30 Cre06.g286350 30778873 0.731310578427 31 Cre06.g281250 30779403, CFA1 0.729597429225 32 Cre11.g477500 30775990 0.725497756197 49 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30778123, ELI1 0.723951622935 36 Cre01.g002250 Serotonin N-acetyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica 30789180 0.721832609246 37 Cre13.g570350 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30784007, AKC4 0.719290736964 41 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana 30782523 0.714158093077 39 Cre08.g358250 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana 30773680, MCA1 0.713770867205 54 Cre06.g281800 30779555 0.711478343589 42 Cre14.g620350 Probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic OS=Oryza sativa subsp. japonica 30776207 0.707973603553 43 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 30782702 0.707961725943 44 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component 30784416 0.706254921169 45 Cre04.g215400 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 30791004, AKC3 0.697570529693 50 Cre12.g542100 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)(50.3.4 : 813.9) 30793513 0.697361137273 51 Cre09.g397250 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta-7/delta-9 fatty acid desaturase 30780967 0.691392348733 53 Cre17.g733162 30782479 0.690181114507 54 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 30791981, FHL1 0.68565834136 55 Cre09.g394325 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30780217, ELI3 0.680974891391 57 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 30780830 0.678019602311 64 Cre04.g213152 30790967 0.676523148346 60 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 30773689 0.675663809594 61 Cre08.g384600 30773961 0.674076796597 100 Cre02.g082550 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase 30785220, ZEP1 0.673715030552 78 Cre10.g439000 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 30790389 0.67328296522 66 Cre01.g007050 30789381, CPLD11 0.67320651724 66 Cre03.g176350 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 30786691, PLP5 0.668349196329 75 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 30783939 0.668098929331 68 Cre09.g401701 30780378 0.667704371723 69 Cre07.g313250 ABC transporter G family member 33 OS=Arabidopsis thaliana 30774970 0.665957641697 70 Cre03.g144184 30787422 0.664909741797 73 Cre12.g494550 30792018, RNP10 0.664623331482 74 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 30784280 0.661153956339 76 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 30780099 0.661004308758 77 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component 30783113 0.655802407094 81 Cre17.g733174 30782691 0.654359151108 83 Cre17.g734612 ABC transporter C family member 14 OS=Arabidopsis thaliana 30781956, MRP2 0.651329483249 91 Cre03.g185850 30786840 0.645161419447 93 Cre09.g403350 30781384 0.644922097798 88