Sequence Description Alias PCC hrr Cpa|evm.model.tig00000949.24 tig00000949_g5736.t1 0.9769777763780942 1 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana tig00000204_g17748.t1 0.9738654433433134 2 Cpa|evm.model.tig00020734.51 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum tig00020734_g13603.t1 0.9664064798091674 3 Cpa|evm.model.tig00000655.47 tig00000655_g2872.t1 0.966018291639193 4 Cpa|evm.model.tig00020557.25 tig00020557_g11123.t1 0.9659159720892437 5 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease tig00000663_g2987.t1 0.9570068436620102 7 Cpa|evm.model.tig00021721.8 tig00021721_g23206.t1 0.9563872022646946 10 Cpa|evm.model.tig00001126.7 tig00001126_g7118.t1 0.9557548214748182 9 Cpa|evm.model.tig00020723.64 tig00020723_g13476.t2 0.9543911898397943 9 Cpa|evm.model.tig00000821.30 tig00000821_g4490.t1 0.9539284359707165 12 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana tig00021537_g22258.t1 0.9533955901137404 11 Cpa|evm.model.tig00021374.35 tig00021374_g21116.t1 0.9527677974428557 12 Cpa|evm.model.tig00000955.24 tig00000955_g5799.t1 0.9524047848264547 14 Cpa|evm.model.tig00021616.13 tig00021616_g22918.t1 0.952309494681597 14 Cpa|evm.model.tig00000057.44 tig00000057_g63.t1 0.9510365540225055 15 Cpa|evm.model.tig00021127.131 tig00021127_g18811.t1 0.9492445193120025 16 Cpa|evm.model.tig00022075.74 tig00022075_g23635.t1 0.9481669536744728 17 Cpa|evm.model.tig00000378.18 tig00000378_g24509.t1 0.9480756183467774 18 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana tig00020553_g10680.t1 0.9466213347421907 19 Cpa|evm.model.tig00001215.19 tig00001215_g7585.t1 0.9439227343588211 20 Cpa|evm.model.tig00000551.6 tig00000551_g2028.t1 0.9410279486636941 21 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) tig00020952_g16502.t1 0.9404001043363082 22 Cpa|evm.model.tig00001071.14 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar tig00001071_g6805.t1 0.9394387729401712 23 Cpa|evm.model.tig00001085.21 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.9390770607703768 24 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020539_g10430.t1 0.9387832131743182 25 Cpa|evm.model.tig00021254.26 tig00021254_g19706.t1 0.9370391931511335 26 Cpa|evm.model.tig00001657.7 tig00001657_g9546.t1 0.9365544631637545 27 Cpa|evm.model.tig00020965.69 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.9361631912692677 28 Cpa|evm.model.tig00001302.9 tig00001302_g8094.t1 0.935919648010534 29 Cpa|evm.model.tig00000093.105 Protein degradation.peptidase families.serine-type peptidase activities.LON protease tig00000093_g3534.t1 0.935590881517328 30 Cpa|evm.model.tig00000344.14 0.9339969242716775 31 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana tig00001339_g8266.t1 0.9330553967978911 32 Cpa|evm.model.tig00000492.83 tig00000492_g1477.t1 0.931593327123128 33 Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.9309915819118509 34 Cpa|evm.model.tig00021035.24 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana tig00021035_g17258.t1 0.9257454507198369 35 Cpa|evm.model.tig00000806.35 tig00000806_g4364.t1 0.9244814082943551 36 Cpa|evm.model.tig00000404.56 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000404_g418.t1 0.9209140847421229 37 Cpa|evm.model.tig00021493.41 tig00021493_g21886.t1 0.9202778794238772 38 Cpa|evm.model.tig00020553.186 tig00020553_g10675.t1 0.918482486806038 39 Cpa|evm.model.tig00001487.8 tig00001487_g8937.t1 0.9174175670754454 40 Cpa|evm.model.tig00000681.17 Protein TIC 55, chloroplastic OS=Arabidopsis thaliana tig00000681_g3064.t1 0.9171781768507278 44 Cpa|evm.model.tig00000093.172 tig00000093_g3599.t1 0.9167769613477289 42 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase tig00001278_g7993.t1 0.9146570214020199 43 Cpa|evm.model.tig00020951.45 tig00020951_g16446.t1 0.9144693602683192 44 Cpa|evm.model.tig00000248.71 tig00000248_g21830.t1 0.913495307074889 45 Cpa|evm.model.tig00000310.32 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000310_g23954.t1 0.9129277629392418 46 Cpa|evm.model.tig00000402.46 tig00000402_g223.t1 0.912396616894217 47 Cpa|evm.model.tig00000459.54 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000459_g1118.t1 0.9118441992140698 48 Cpa|evm.model.tig00021617.18 tig00021617_g22945.t1 0.9115545959610204 49 Cpa|evm.model.tig00022104.1 tig00022104_g23814.t1 0.9109562378348487 50 Cpa|evm.model.tig00001310.4 tig00001310_g8153.t1 0.9108192749527204 51 Cpa|evm.model.tig00001085.20 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.9098123873398489 52 Cpa|evm.model.tig00000586.13 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000586_g2256.t1 0.9094687923182251 53 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana tig00020675_g12662.t1 0.9093083169370643 54 Cpa|evm.model.tig00000691.29 tig00000691_g3181.t1 0.9086375069564541 55 Cpa|evm.model.tig00000737.24 tig00000737_g3804.t1 0.907968647946325 56 Cpa|evm.model.tig00000912.32 Protein degradation.peptidase families.serine-type peptidase activities.LON protease tig00000912_g5437.t1 0.90789419346143 57 Cpa|evm.model.tig00000042.42 tig00000042_g15433.t1 0.9077455002390242 58 Cpa|evm.model.tig00021579.19 Cryptochrome-1 OS=Arabidopsis thaliana tig00021579_g22443.t1 0.9073918681264398 59 Cpa|evm.model.tig00000241.155 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor tig00000241_g21020.t1 0.9065890265063796 60 Cpa|evm.model.tig00020938.9 Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic OS=Arabidopsis thaliana tig00020938_g16134.t1 0.9062759554992963 61 Cpa|evm.model.tig00001155.24 Protein NCA1 OS=Arabidopsis thaliana tig00001155_g7330.t1 0.9057624142587914 62 Cpa|evm.model.tig00000670.28 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000670_g3045.t1 0.9051913760483185 63 Cpa|evm.model.tig00000940.9 tig00000940_g5547.t1 0.9047358138262083 64 Cpa|evm.model.tig00021537.37 tig00021537_g22288.t1 0.9045212719020951 65 Cpa|evm.model.tig00000079.6 tig00000079_g2794.t2 0.9041845212040385 66 Cpa|evm.model.tig00000823.29 DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana tig00000823_g4555.t1 0.9036255738743645 67 Cpa|evm.model.tig00000361.1 tig00000361_g24355.t1 0.9013471562138357 68 Cpa|evm.model.tig00000455.54 tig00000455_g1052.t1 0.9009138603627828 69 Cpa|evm.model.tig00021441.9 tig00021441_g21550.t1 0.9002051293258287 70 Cpa|evm.model.tig00000553.12 tig00000553_g2082.t1 0.9000009162959423 71 Cpa|evm.model.tig00021135.14 tig00021135_g18935.t1 0.8958794907008848 72 Cpa|evm.model.tig00000796.24 tig00000796_g4247.t1 0.8948078415790081 73 Cpa|evm.model.tig00000507.23 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii tig00000507_g1777.t1 0.8945898403835648 74 Cpa|evm.model.tig00000190.38 tig00000190_g13857.t1 0.8945584381579996 75 Cpa|evm.model.tig00020556.38 tig00020556_g11006.t1 0.8939772839296488 76 Cpa|evm.model.tig00020553.74 tig00020553_g10564.t1 0.8934824237432659 77 Cpa|evm.model.tig00020710.126 tig00020710_g13390.t1 0.8932022039110968 78 Cpa|evm.model.tig00020961.57 Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana tig00020961_g16679.t1 0.891996651096572 79 Cpa|evm.model.tig00001086.15 tig00001086_g6850.t1 0.8919559527217104 80 Cpa|evm.model.tig00020603.30 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana tig00020603_g11762.t1 0.8918089161921354 81 Cpa|evm.model.tig00021680.19 tig00021680_g23041.t1 0.8911621329016358 82 Cpa|evm.model.tig00000169.34 Peptide methionine sulfoxide reductase B5 OS=Arabidopsis thaliana tig00000169_g11906.t1 0.890679665574784 83 Cpa|evm.model.tig00021312.29 tig00021312_g20063.t1 0.8902815846620881 84 Cpa|evm.model.tig00020563.171 Protein degradation.peptidase families.metallopeptidase activities.M48 families.PGM48 zinc metalloprotease tig00020563_g11372.t1 0.8898864469904106 85 Cpa|evm.model.tig00021489.14 Sanguinarine reductase OS=Eschscholzia californica tig00021489_g21661.t1 0.889634018302538 86 Cpa|evm.model.tig00021373.6 Peroxiredoxin Q, chloroplastic OS=Triticum aestivum tig00021373_g21073.t1 0.888709342726043 87 Cpa|evm.model.tig00000215.56 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana tig00000215_g18594.t1 0.8862152492190856 88 Cpa|evm.model.tig00000367.31 tig00000367_g24467.t1 0.8858752950047439 89 Cpa|evm.model.tig00020941.39 tig00020941_g16231.t1 0.8850469469481421 90 Cpa|evm.model.tig00020660.19 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020660_g12512.t1 0.8844026838977695 91 Cpa|evm.model.tig00000241.114 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase tig00000241_g20980.t1 0.8829138244516134 92 Cpa|evm.model.tig00020553.191 ABC transporter C family member 11 OS=Arabidopsis thaliana tig00020553_g10681.t1 0.8827151639382237 93 Cpa|evm.model.tig00000157.5 Solute transport.carrier-mediated transport.MC-type solute transporter tig00000157_g9593.t1 0.8808009900928994 94 Cpa|evm.model.tig00021038.81 Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana tig00021038_g17570.t1 0.8805409913268446 95 Cpa|evm.model.tig00021135.25 tig00021135_g18947.t1 0.8804776325220358 96 Cpa|evm.model.tig00001368.15 ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana tig00001368_g8414.t1 0.8803932569700604 97 Cpa|evm.model.tig00000711.69 DNA repair protein RAD5B OS=Arabidopsis thaliana tig00000711_g3431.t1 0.8802261714431155 98 Cpa|evm.model.tig00000955.10 DNA damage response.DNA repair mechanisms.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1) tig00000955_g5782.t1 0.8800877655598729 99 Cpa|evm.model.tig00020830.39 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic OS=Arabidopsis thaliana tig00020830_g14420.t1 0.8796033775910287 100