Sequence Description Alias PCC hrr Cpa|evm.model.tig00021127.131 tig00021127_g18811.t1 0.9857645787299784 1 Cpa|evm.model.tig00000404.56 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000404_g418.t1 0.967851236227911 3 Cpa|evm.model.tig00021373.6 Peroxiredoxin Q, chloroplastic OS=Triticum aestivum tig00021373_g21073.t1 0.967273493979036 3 Cpa|evm.model.tig00020909.30 tig00020909_g15352.t1 0.9669804045888908 4 Cpa|evm.model.tig00000144.28 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000144_g9017.t1 0.965473203429542 5 Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.96478661335471 6 Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 0.9603187742512469 7 Cpa|evm.model.tig00021135.14 tig00021135_g18935.t1 0.959546668872373 8 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) tig00020952_g16502.t1 0.9593083040073269 9 Cpa|evm.model.tig00021616.13 tig00021616_g22918.t1 0.9540466589598142 10 Cpa|evm.model.tig00000459.54 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000459_g1118.t1 0.9527202419414378 11 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana tig00021537_g22258.t1 0.9502412700313293 12 Cpa|evm.model.tig00000940.9 tig00000940_g5547.t1 0.9473974210984769 13 Cpa|evm.model.tig00000507.23 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii tig00000507_g1777.t1 0.9422220397693267 14 Cpa|evm.model.tig00000492.83 tig00000492_g1477.t1 0.941072484559062 15 Cpa|evm.model.tig00000655.47 tig00000655_g2872.t1 0.9396124170381542 22 Cpa|evm.model.tig00000254.94 tig00000254_g22550.t1 0.9394387729401712 23 Cpa|evm.model.tig00020592.4 ABC transporter C family member 1 OS=Arabidopsis thaliana tig00020592_g11633.t1 0.9390289959589917 18 Cpa|evm.model.tig00000551.6 tig00000551_g2028.t1 0.9386719522835157 19 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana tig00000204_g17748.t1 0.9370262563304484 22 Cpa|evm.model.tig00000737.24 tig00000737_g3804.t1 0.93636672939989 21 Cpa|evm.model.tig00020556.38 tig00020556_g11006.t1 0.9359817882576791 22 Cpa|evm.model.tig00020965.69 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.9358451396003982 23 Cpa|evm.model.tig00000361.58 tig00000361_g24406.t1 0.9348915514923802 24 Cpa|evm.model.tig00000215.56 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana tig00000215_g18594.t1 0.9336636406619145 25 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana tig00020675_g12662.t1 0.9331570068719667 26 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana tig00020553_g10680.t1 0.9317569397943876 33 Cpa|evm.model.tig00021680.1 tig00021680_g23021.t1 0.9314155681172804 28 Cpa|evm.model.tig00022104.1 tig00022104_g23814.t1 0.9307253706966616 29 Cpa|evm.model.tig00000079.6 tig00000079_g2794.t2 0.9304898575217299 30 Cpa|evm.model.tig00000344.14 0.9294618667385735 31 Cpa|evm.model.tig00022075.74 tig00022075_g23635.t1 0.9274999018918867 32 Cpa|evm.model.tig00021489.14 Sanguinarine reductase OS=Eschscholzia californica tig00021489_g21661.t1 0.9272953742411861 33 Cpa|evm.model.tig00000219.71 Protein high chlorophyll fluorescent 107 OS=Arabidopsis thaliana tig00000219_g19507.t1 0.9249681818030142 34 Cpa|evm.model.tig00001126.7 tig00001126_g7118.t1 0.9231450815104278 47 Cpa|evm.model.tig00020553.186 tig00020553_g10675.t1 0.9228836652467786 36 Cpa|evm.model.tig00021617.18 tig00021617_g22945.t1 0.9225237781781037 37 Cpa|evm.model.tig00001065.21 tig00001065_g6722.t1 0.9221254171903228 38 Cpa|evm.model.tig00020614.73 tig00020614_g12187.t1 0.9220195040582715 39 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana tig00001339_g8266.t1 0.920349292906553 41 Cpa|evm.model.tig00021254.26 tig00021254_g19706.t1 0.9187735358016254 41 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase tig00001278_g7993.t1 0.9184878957911348 42 Cpa|evm.model.tig00020556.13 tig00020556_g10984.t1 0.918044444377027 43 Cpa|evm.model.tig00001086.15 tig00001086_g6850.t1 0.9172526870994195 44 Cpa|evm.model.tig00021238.4 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein tig00021238_g19543.t1 0.9168505547790107 45 Cpa|evm.model.tig00000981.5 tig00000981_g5860.t1 0.9158272503570075 46 Cpa|evm.model.tig00001368.15 ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana tig00001368_g8414.t1 0.9148703303293024 47 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020539_g10430.t1 0.9140355723774015 48 Cpa|evm.model.tig00000361.1 tig00000361_g24355.t1 0.9133617397689396 49 Cpa|evm.model.tig00000057.44 tig00000057_g63.t1 0.9126249208153927 50 Cpa|evm.model.tig00021126.3 ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana tig00021126_g18456.t1 0.9125323022853074 51 Cpa|evm.model.tig00020553.191 ABC transporter C family member 11 OS=Arabidopsis thaliana tig00020553_g10681.t1 0.908601012144998 52 Cpa|evm.model.tig00000760.8 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000760_g3929.t1 0.9069177157409687 53 Cpa|evm.model.tig00000378.18 tig00000378_g24509.t1 0.9066855169393023 56 Cpa|evm.model.tig00021441.9 tig00021441_g21550.t1 0.9065401455335189 55 Cpa|evm.model.tig00000889.39 tig00000889_g5332.t1 0.9065335201507838 56 Cpa|evm.model.tig00000949.24 tig00000949_g5736.t1 0.904839585650123 57 Cpa|evm.model.tig00020943.73 RNA biosynthesis.transcriptional activation.bHLH transcription factor tig00020943_g16313.t1 0.9046865603045184 58 Cpa|evm.model.tig00020734.51 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum tig00020734_g13603.t1 0.9044811579243376 59 Cpa|evm.model.tig00000241.155 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor tig00000241_g21020.t1 0.9013915855925748 60 Cpa|evm.model.tig00000403.33 tig00000403_g289.t1 0.9005879281442506 61 Cpa|evm.model.tig00001085.20 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.8993007267271022 62 Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 0.8981782796875758 63 Cpa|evm.model.tig00021374.35 tig00021374_g21116.t1 0.8975517500042387 65 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease tig00000663_g2987.t1 0.8951400358291834 73 Cpa|evm.model.tig00021721.8 tig00021721_g23206.t1 0.8932080583912593 78 Cpa|evm.model.tig00021464.19 tig00021464_g21725.t1 0.892306432644155 67 Cpa|evm.model.tig00001085.21 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.8920631356386284 77 Cpa|evm.model.tig00000169.33 tig00000169_g11905.t1 0.8906698643098377 69 Cpa|evm.model.tig00021179.40 Carotenoid cleavage dioxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica tig00021179_g19254.t1 0.8906344408021246 70 Cpa|evm.model.tig00000342.41 tig00000342_g24225.t1 0.8904693387125197 71 Cpa|evm.model.tig00000718.1 ABC transporter C family member 2 OS=Arabidopsis thaliana tig00000718_g3679.t1 0.8900585213408652 72 Cpa|evm.model.tig00000806.35 tig00000806_g4364.t1 0.8896302810880522 73 Cpa|evm.model.tig00000073.69 tig00000073_g1752.t1 0.8890163239506403 74 Cpa|evm.model.tig00020557.25 tig00020557_g11123.t1 0.8889796922160795 89 Cpa|evm.model.tig00001657.7 tig00001657_g9546.t1 0.8888252828197029 97 Cpa|evm.model.tig00000821.30 tig00000821_g4490.t1 0.8878861384116082 84 Cpa|evm.model.tig00001215.19 tig00001215_g7585.t1 0.886682852893017 78 Cpa|evm.model.tig00000980.32 tig00000980_g6160.t1 0.8862598034797291 79 Cpa|evm.model.tig00000248.21 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana tig00000248_g21787.t1 0.8855475623266853 80 Cpa|evm.model.tig00020723.64 tig00020723_g13476.t2 0.8852263024778773 81 Cpa|evm.model.tig00000204.30 tig00000204_g17698.t1 0.8840315526467715 82 Cpa|evm.model.tig00000796.16 tig00000796_g4238.t1 0.8817479332337117 83 Cpa|evm.model.tig00021035.15 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00021035_g17247.t1 0.8811528866986112 84 Cpa|evm.model.tig00000802.18 tig00000802_g4269.t1 0.8808278070806704 86 Cpa|evm.model.tig00020660.34 tig00020660_g12531.t1 0.8806836487142612 87 Cpa|evm.model.tig00020660.19 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020660_g12512.t1 0.8805151902003245 88 Cpa|evm.model.tig00000430.44 tig00000430_g633.t1 0.8802189042160115 89 Cpa|evm.model.tig00000042.43 Histidine kinase 3 OS=Arabidopsis thaliana tig00000042_g15436.t1 0.8792413940746212 90 Cpa|evm.model.tig00000142.17 tig00000142_g8652.t1 0.877250737471858 92 Cpa|evm.model.tig00021017.25 tig00021017_g17199.t1 0.873983351278611 93 Cpa|evm.model.tig00021493.41 tig00021493_g21886.t1 0.8733612727645954 94 Cpa|evm.model.tig00021357.42 tig00021357_g20768.t1 0.8732129700711208 95 Cpa|evm.model.tig00000718.2 ABC transporter C family member 2 OS=Arabidopsis thaliana tig00000718_g3679.t1 0.8725966323089069 96 Cpa|evm.model.tig00001729.6 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter tig00001729_g9740.t1 0.8721468658612112 97 Cpa|evm.model.tig00000178.17 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase tig00000178_g12727.t1 0.871296468305869 98 Cpa|evm.model.tig00001024.2 ABC transporter C family member 14 OS=Arabidopsis thaliana tig00001729_g9740.t1 0.8712812524202529 99 Cpa|evm.model.tig00021501.21 tig00021501_g21959.t1 0.870977392302939 100