Sequence Description Alias PCC hrr Cpa|evm.model.tig00000203.32 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP remodeling.DBP5/LOS4 ATP-dependent helicase tig00000203_g17139.t1 0.9510623490724774 1 Cpa|evm.model.tig00021435.13 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN2 component tig00021435_g21391.t1 0.9497428455517012 2 Cpa|evm.model.tig00001234.10 Protein modification.phosphorylation.CMGC kinase superfamily.MAPK kinase tig00001234_g7732.t1 0.9442185089256977 3 Cpa|evm.model.tig00020553.144 Chromatin organisation.histone modifications.histone acetylation.MYST-type histone acetyltransferase tig00020553_g10634.t1 0.9336788479990241 5 Cpa|evm.model.tig00020553.156 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit tig00020553_g10647.t1 0.9320231544433318 6 Cpa|evm.model.tig00021589.1 tig00021589_g22707.t1 0.926742431941386 14 Cpa|evm.model.tig00000829.11 Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana tig00000829_g4654.t1 0.9223593276654558 7 Cpa|evm.model.tig00021464.17 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana tig00021464_g21723.t1 0.9222552484266151 8 Cpa|evm.model.tig00021181.5 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1M medium mu subunit tig00021181_g19309.t1 0.9205481375986858 9 Cpa|evm.model.tig00001107.12 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component tig00001107_g7097.t1 0.9204144638135247 20 Cpa|evm.model.tig00000863.17 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana tig00000863_g4973.t1 0.9192475454202393 32 Cpa|evm.model.tig00001206.15 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF1/MAC9 component tig00001206_g7500.t1 0.9178770223109646 14 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase tig00020553_g10653.t1 0.9176415175485214 39 Cpa|evm.model.tig00000241.32 Vesicle trafficking.target membrane tethering.COG (Conserved-Oligomeric Golgi) complex.COG3 component tig00000241_g20890.t1 0.9173906124876274 14 Cpa|evm.model.tig00001107.4 Deoxyhypusine synthase OS=Senecio vernalis tig00001107_g7092.t1 0.9127946221238382 15 Cpa|evm.model.tig00001206.10 Peptide chain release factor APG3, chloroplastic OS=Arabidopsis thaliana tig00001206_g7494.t1 0.9127912281380349 16 Cpa|evm.model.tig00020918.9 tig00020918_g15886.t1 0.9051250226637133 23 Cpa|evm.model.tig00000144.166 Actin-related protein 5 OS=Arabidopsis thaliana tig00000144_g9159.t1 0.9046740200333409 37 Cpa|evm.model.tig00001292.18 Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana tig00001292_g8051.t1 0.904636479463232 19 Cpa|evm.model.tig00020554.31 Enzyme classification.EC_5 isomerases.EC_5.1 racemase or epimerase(50.5.1 : 388.2) & GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana tig00020554_g10816.t1 0.901803360782929 24 Cpa|evm.model.tig00020918.12 Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana tig00020918_g15889.t1 0.9004031672872939 49 Cpa|evm.model.tig00001107.11 Secondary metabolism.terpenoids.terpenoid synthesis.cycloartenol synthesis.squalene synthase tig00001107_g7096.t1 0.9002027628035091 25 Cpa|evm.model.tig00000704.40 tig00000704_g3327.t1 0.8997590619620932 35 Cpa|evm.model.tig00021612.44 tig00021612_g22885.t1 0.8987265608018866 42 Cpa|evm.model.tig00000076.105 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana tig00000076_g2403.t1 0.8963022931816593 25 Cpa|evm.model.tig00000144.174 Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana tig00000144_g9167.t1 0.8956439809963919 26 Cpa|evm.model.tig00000037.19 tig00000037_g10087.t1 0.8926166687037095 27 Cpa|evm.model.tig00000197.16 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.SKP1/ASK1 target protein binding component tig00000197_g15694.t1 0.892094211906816 37 Cpa|evm.model.tig00021319.61 tig00021319_g20254.t1 0.8906272171018822 34 Cpa|evm.model.tig00021433.27 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-gamma component tig00021433_g21279.t1 0.8899554731173238 30 Cpa|evm.model.tig00000241.177 tig00000241_g21047.t1 0.8893879583663925 31 Cpa|evm.model.tig00000829.30 Protein modification.phosphorylation.ULK kinase tig00000829_g4671.t1 0.8887930382565677 43 Cpa|evm.model.tig00000615.68 Ras-related protein RABA4a OS=Arabidopsis thaliana tig00000615_g2598.t1 0.888757339401467 43 Cpa|evm.model.tig00000704.21 COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana tig00000704_g3311.t1 0.887474236220621 61 Cpa|evm.model.tig00021433.16 tig00021433_g21270.t1 0.884519754773706 35 Cpa|evm.model.tig00021348.91 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.NBS1 component tig00021348_g20598.t1 0.8840642312983813 36 Cpa|evm.model.tig00001229.14 Protein degradation.peptide tagging.Ubiquitin-fold-modifier (UFM)-anchor addition.UFM conjugation E2 protein tig00001229_g7846.t1 0.8833858057400974 37 Cpa|evm.model.tig00000829.3 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component tig00000829_g4645.t1 0.8833777022830664 38 Cpa|evm.model.tig00021464.53 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase tig00021464_g21756.t1 0.8823542359546956 73 Cpa|evm.model.tig00000217.28 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component tig00000217_g19161.t1 0.8823080644464675 88 Cpa|evm.model.tig00000073.32 Oligoribonuclease OS=Arabidopsis thaliana tig00000073_g1714.t1 0.8821002926327217 41 Cpa|evm.model.tig00020848.76 0.8818183802757967 53 Cpa|evm.model.tig00000989.12 Phytohormones.cytokinin.perception and signal transduction.AHP-type signal transducer tig00000989_g6085.t1 0.8812792853572591 49 Cpa|evm.model.tig00000912.18 tig00000912_g5423.t1 0.8788155909019082 61 Cpa|evm.model.tig00000829.24 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component tig00000829_g4665.t1 0.8783061967461524 45 Cpa|evm.model.tig00000704.52 Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana tig00000704_g3339.t1 0.8781127989887801 46 Cpa|evm.model.tig00001229.13 tig00001229_g7845.t1 0.8774760389390461 73 Cpa|evm.model.tig00020614.99 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.GPN1/QQT2 nuclear import factor tig00020614_g12214.t1 0.8764002090639272 73 Cpa|evm.model.tig00020903.14 Protein degradation.peptidase families.cysteine-type peptidase activities.UFM1-specific protease tig00020903_g15082.t1 0.8759215444307878 74 Cpa|evm.model.tig00000403.78 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN8 regulatory component tig00000403_g338.t1 0.8757281661816889 84 Cpa|evm.model.tig00020553.145 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component tig00020553_g10636.t1 0.87571595166582 51 Cpa|evm.model.tig00001029.19 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B4 component tig00001029_g6418.t1 0.8754456936476633 52 Cpa|evm.model.tig00000615.78 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN6 regulatory component tig00000615_g2608.t1 0.8752662317040671 54 Cpa|evm.model.tig00020848.37 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid synthesis.UDP-D-glucose 6-dehydrogenase tig00020848_g14564.t1 0.874376862042976 55 Cpa|evm.model.tig00000042.86 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.SEC22-type protein tig00000042_g15484.t1 0.8728349617704346 57 Cpa|evm.model.tig00020553.160 tig00020553_g10652.t1 0.8706332807000516 58 Cpa|evm.model.tig00022075.51 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP4 component tig00022075_g23612.t1 0.8700373534496328 59 Cpa|evm.model.tig00020675.94 tig00020675_g12677.t1 0.8696078493923619 60 Cpa|evm.model.tig00020903.30 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit tig00020903_g15096.t1 0.8693787465965369 61 Cpa|evm.model.tig00000789.46 tig00000789_g4140.t1 0.8682515003142779 62 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase tig00001107_g7091.t1 0.8672130171124739 66 Cpa|evm.model.tig00000842.4 Phosphoinositide phosphatase SAC6 OS=Arabidopsis thaliana tig00000842_g4823.t1 0.8667744594184723 65 Cpa|evm.model.tig00000144.51 Protein modification.disulfide bond formation.endoplasmic reticulum.thiol-disulfide oxidoreductase (ERO) tig00000144_g9043.t1 0.8665487583711201 67 Cpa|evm.model.tig00001085.3 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component tig00001085_g6944.t1 0.8659672952304529 68 Cpa|evm.model.tig00020554.52 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst tig00020554_g10834.t1 0.865659061300435 69 Cpa|evm.model.tig00020684.31 Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana tig00020684_g12880.t1 0.864108978479619 70 Cpa|evm.model.tig00000037.40 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.URGT/UXT nucleotide sugar transporter tig00000037_g10109.t1 0.864078356718133 71 Cpa|evm.model.tig00020903.33 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.beta2 subunit tig00020903_g15100.t1 0.864034410764719 72 Cpa|evm.model.tig00000704.36 Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana tig00000704_g3324.t1 0.8622167944035332 75 Cpa|evm.model.tig00001372.8 0.8603744931527852 77 Cpa|evm.model.tig00000402.41 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B1 component tig00000402_g218.t1 0.8602390403572296 78 Cpa|evm.model.tig00001085.15 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.SRP14 component tig00001085_g6955.t1 0.8594262858413679 79 Cpa|evm.model.tig00001372.2 0.8590760349059063 80 Cpa|evm.model.tig00000704.53 SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana tig00000704_g3340.t1 0.858811218384175 81 Cpa|evm.model.tig00020553.158 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component tig00020553_g10649.t1 0.8573658622070893 86 Cpa|evm.model.tig00000802.47 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana tig00000802_g4296.t1 0.8570308686579801 86 Cpa|evm.model.tig00000836.8 Chromatin organisation.chromatin remodeling complexes.RVB helicase component tig00000836_g4692.t1 0.8567854682898663 92 Cpa|evm.model.tig00000194.20 tig00000194_g14748.t1 0.8566973831806552 88 Cpa|evm.model.tig00020553.149 tig00020553_g10640.t1 0.8554425121634326 90 Cpa|evm.model.tig00021357.28 Protein modification.phosphorylation.atypical kinase families.RIO kinase tig00021357_g20757.t1 0.8549379130199004 100 Cpa|evm.model.tig00000388.25 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component tig00000388_g24787.t1 0.8533017643362985 93 Cpa|evm.model.tig00000037.37 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase tig00000037_g10105.t1 0.8527449717294502 94 Cpa|evm.model.tig00000704.66 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor tig00000704_g3350.t1 0.8526346460948697 95 Cpa|evm.model.tig00001003.36 Ribosome production factor 2 homolog OS=Arabidopsis thaliana tig00001003_g6291.t1 0.8525557456681324 96 Cpa|evm.model.tig00020544.9 DNA repair protein UVH3 OS=Arabidopsis thaliana tig00020544_g10489.t1 0.8519236540350198 97 Cpa|evm.model.tig00001372.3 tig00001372_g8455.t1 0.849968755890875 99 Cpa|evm.model.tig00020685.15 tig00020685_g12930.t1 0.8495497024187411 100