Sequence Description Alias PCC hrr Cpa|evm.model.tig00000821.30 tig00000821_g4490.t1 0.9770595818296031 2 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease tig00000663_g2987.t1 0.9757754275577613 2 Cpa|evm.model.tig00020723.64 tig00020723_g13476.t2 0.9750283352301414 3 Cpa|evm.model.tig00000949.24 tig00000949_g5736.t1 0.9721352818044922 4 Cpa|evm.model.tig00000378.18 tig00000378_g24509.t1 0.966392413558883 5 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana tig00000204_g17748.t1 0.9600824583753803 6 Cpa|evm.model.tig00001310.4 tig00001310_g8153.t1 0.9592325496881928 7 Cpa|evm.model.tig00000093.105 Protein degradation.peptidase families.serine-type peptidase activities.LON protease tig00000093_g3534.t1 0.9585179773244845 8 Cpa|evm.model.tig00021493.41 tig00021493_g21886.t1 0.9565396360734214 9 Cpa|evm.model.tig00000254.94 tig00000254_g22550.t1 0.9563872022646946 10 Cpa|evm.model.tig00000955.24 tig00000955_g5799.t1 0.9544357018630691 11 Cpa|evm.model.tig00021254.26 tig00021254_g19706.t1 0.9531947518053291 12 Cpa|evm.model.tig00020557.25 tig00020557_g11123.t1 0.9527130186357247 13 Cpa|evm.model.tig00000248.71 tig00000248_g21830.t1 0.9510939805132426 14 Cpa|evm.model.tig00000681.17 Protein TIC 55, chloroplastic OS=Arabidopsis thaliana tig00000681_g3064.t1 0.9506875807046461 15 Cpa|evm.model.tig00021579.19 Cryptochrome-1 OS=Arabidopsis thaliana tig00021579_g22443.t1 0.9493454748447295 16 Cpa|evm.model.tig00000093.172 tig00000093_g3599.t1 0.9485298655958663 17 Cpa|evm.model.tig00000402.46 tig00000402_g223.t1 0.9454359779498747 18 Cpa|evm.model.tig00001215.19 tig00001215_g7585.t1 0.9448862257537506 19 Cpa|evm.model.tig00000310.32 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000310_g23954.t1 0.944383788661364 20 Cpa|evm.model.tig00000241.155 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor tig00000241_g21020.t1 0.9440393967223742 21 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020539_g10430.t1 0.9433756841552942 22 Cpa|evm.model.tig00000586.13 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000586_g2256.t1 0.9428997205411092 23 Cpa|evm.model.tig00021374.35 tig00021374_g21116.t1 0.9428246535647671 24 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana tig00021537_g22258.t1 0.9412559643122554 25 Cpa|evm.model.tig00001126.7 tig00001126_g7118.t1 0.9410674289806406 26 Cpa|evm.model.tig00021312.29 tig00021312_g20063.t1 0.9409643355194112 27 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana tig00001339_g8266.t1 0.9408232337894903 28 Cpa|evm.model.tig00001302.9 tig00001302_g8094.t1 0.9402591520610238 29 Cpa|evm.model.tig00000042.42 tig00000042_g15433.t1 0.9391560114629403 30 Cpa|evm.model.tig00000670.28 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein tig00000670_g3045.t1 0.9387534838591374 31 Cpa|evm.model.tig00000955.10 DNA damage response.DNA repair mechanisms.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1) tig00000955_g5782.t1 0.9348324841460987 32 Cpa|evm.model.tig00021616.13 tig00021616_g22918.t1 0.9346551195966434 33 Cpa|evm.model.tig00001155.24 Protein NCA1 OS=Arabidopsis thaliana tig00001155_g7330.t1 0.9345772297272401 34 Cpa|evm.model.tig00020965.69 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.9334607174295023 35 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) tig00020952_g16502.t1 0.932145170764027 36 Cpa|evm.model.tig00001657.7 tig00001657_g9546.t1 0.9319777832440913 37 Cpa|evm.model.tig00000691.29 tig00000691_g3181.t1 0.9318438807131109 38 Cpa|evm.model.tig00020938.9 Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic OS=Arabidopsis thaliana tig00020938_g16134.t1 0.9315019873827185 39 Cpa|evm.model.tig00020553.66 tig00020553_g10555.t1 0.9283388359142781 40 Cpa|evm.model.tig00020734.51 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum tig00020734_g13603.t1 0.9258312599624727 41 Cpa|evm.model.tig00000655.47 tig00000655_g2872.t1 0.924064685449304 42 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana tig00020553_g10680.t1 0.9235587956313938 43 Cpa|evm.model.tig00000057.44 tig00000057_g63.t1 0.9227097776013514 44 Cpa|evm.model.tig00001487.8 tig00001487_g8937.t1 0.9224325426962836 45 Cpa|evm.model.tig00000553.12 tig00000553_g2082.t1 0.9217122701486469 46 Cpa|evm.model.tig00021035.24 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana tig00021035_g17258.t1 0.9217063872067869 47 Cpa|evm.model.tig00020941.39 tig00020941_g16231.t1 0.9213714096600806 48 Cpa|evm.model.tig00000269.112 tig00000269_g23774.t1 0.9204729417526551 49 Cpa|evm.model.tig00000480.41 tig00000480_g1309.t1 0.9199463657318635 50 Cpa|evm.model.tig00021339.48 tig00021339_g20435.t1 0.9188928522854166 51 Cpa|evm.model.tig00000711.69 DNA repair protein RAD5B OS=Arabidopsis thaliana tig00000711_g3431.t1 0.9184139253021008 52 Cpa|evm.model.tig00000806.35 tig00000806_g4364.t1 0.9166885403136211 53 Cpa|evm.model.tig00000823.29 DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana tig00000823_g4555.t1 0.9149030464034221 54 Cpa|evm.model.tig00021127.131 tig00021127_g18811.t1 0.9142753268120694 55 Cpa|evm.model.tig00020951.45 tig00020951_g16446.t1 0.9140989346035407 56 Cpa|evm.model.tig00021617.18 tig00021617_g22945.t1 0.9127180634610615 57 Cpa|evm.model.tig00020560.15 tig00020560_g11080.t1 0.9126535482412516 58 Cpa|evm.model.tig00000391.27 tig00000391_g24860.t1 0.9118667749139372 59 Cpa|evm.model.tig00000912.32 Protein degradation.peptidase families.serine-type peptidase activities.LON protease tig00000912_g5437.t1 0.9110986651197325 60 Cpa|evm.model.tig00022075.74 tig00022075_g23635.t1 0.9099756754317359 61 Cpa|evm.model.tig00000551.3 tig00000551_g2024.t1 0.9080736664667758 62 Cpa|evm.model.tig00000344.14 0.9077691961885928 63 Cpa|evm.model.tig00021537.37 tig00021537_g22288.t1 0.9075625849699468 64 Cpa|evm.model.tig00001085.21 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.906321040027779 65 Cpa|evm.model.tig00000478.28 Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana tig00000478_g1276.t1 0.9045854987366673 66 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase tig00001278_g7993.t1 0.9041991433450369 67 Cpa|evm.model.tig00020553.186 tig00020553_g10675.t1 0.9001937920707499 68 Cpa|evm.model.tig00020553.74 tig00020553_g10564.t1 0.899975169052258 69 Cpa|evm.model.tig00021254.2 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor tig00021254_g19677.t1 0.8998344975090843 70 Cpa|evm.model.tig00001490.9 tig00001490_g8974.t1 0.8987419343412066 71 Cpa|evm.model.tig00000455.54 tig00000455_g1052.t1 0.8985130994665701 72 Cpa|evm.model.tig00000492.83 tig00000492_g1477.t1 0.8981929388813084 73 Cpa|evm.model.tig00021108.20 tig00021108_g18310.t1 0.895963767668256 74 Cpa|evm.model.tig00000551.6 tig00000551_g2028.t1 0.8952093051318385 75 Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.8951893058377087 76 Cpa|evm.model.tig00000190.38 tig00000190_g13857.t1 0.8941082763274407 77 Cpa|evm.model.tig00001071.14 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar tig00001071_g6805.t1 0.8932080583912593 78 Cpa|evm.model.tig00000241.135 tig00000241_g21000.t1 0.8908849207685882 79 Cpa|evm.model.tig00020556.38 tig00020556_g11006.t1 0.8906982473249832 83 Cpa|evm.model.tig00020537.49 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX-type) tig00020537_g10271.t1 0.8901931329848852 81 Cpa|evm.model.tig00020710.126 tig00020710_g13390.t1 0.8896931580984183 82 Cpa|evm.model.tig00000254.128 tig00000254_g22588.t1 0.8896554844583797 83 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana tig00020675_g12662.t1 0.8891489893638617 84 Cpa|evm.model.tig00001128.6 tig00001128_g7172.t1 0.8886893370995741 85 Cpa|evm.model.tig00021358.2 tig00021045_g17649.t1 0.8885804405139337 86 Cpa|evm.model.tig00021494.27 tig00021494_g21938.t1 0.8884349594931066 87 Cpa|evm.model.tig00020603.30 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana tig00020603_g11762.t1 0.8870286214367815 88 Cpa|evm.model.tig00020830.39 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic OS=Arabidopsis thaliana tig00020830_g14420.t1 0.8862621497956615 89 Cpa|evm.model.tig00000367.31 tig00000367_g24467.t1 0.8859562192472719 90 Cpa|evm.model.tig00020961.57 Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana tig00020961_g16679.t1 0.8850300113638304 91 Cpa|evm.model.tig00020554.147 tig00020554_g10924.t1 0.8845549453942837 92 Cpa|evm.model.tig00000361.1 tig00000361_g24355.t1 0.8843482809434547 93 Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 0.8839252417745767 94 Cpa|evm.model.tig00021796.8 tig00021796_g23559.t1 0.8825803726192502 95 Cpa|evm.model.tig00021435.52 tig00021435_g21433.t1 0.8824555609027386 96 Cpa|evm.model.tig00000215.11 tig00000215_g18540.t1 0.8820265177005034 97 Cpa|evm.model.tig00000383.32 Magnesium-chelatase subunit ChlH, chloroplastic OS=Oryza sativa subsp. japonica tig00000383_g24642.t1 0.8819488586672746 98 Cpa|evm.model.tig00020961.55 tig00020961_g16677.t1 0.8816551935570904 99 Cpa|evm.model.tig00000073.49 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter tig00000073_g1729.t1 0.8807545070782136 100