Sequence Description Alias PCC hrr Cpa|evm.model.tig00000197.16 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.SKP1/ASK1 target protein binding component tig00000197_g15694.t1 0.9400235424703072 1 Cpa|evm.model.tig00001049.13 tig00001049_g6663.t1 0.9399683946855967 2 Cpa|evm.model.tig00021123.23 tig00021123_g18507.t1 0.9350628290326573 3 Cpa|evm.model.tig00021319.66 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC3/Tex1 component tig00021319_g20258.t1 0.9258585243240761 16 Cpa|evm.model.tig00000217.28 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component tig00000217_g19161.t1 0.9244359032710606 11 Cpa|evm.model.tig00000241.177 tig00000241_g21047.t1 0.92423320332105 6 Cpa|evm.model.tig00020553.157 Protein BTR1 OS=Arabidopsis thaliana tig00020553_g10648.t1 0.9217582282919249 9 Cpa|evm.model.tig00020909.31 Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana tig00020909_g15353.t1 0.9177725505793043 8 Cpa|evm.model.tig00001206.15 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF1/MAC9 component tig00001206_g7500.t1 0.9162338474044468 15 Cpa|evm.model.tig00020918.9 tig00020918_g15886.t1 0.9143878956047132 13 Cpa|evm.model.tig00001424.4 tig00001424_g8703.t1 0.9136206206459723 13 Cpa|evm.model.tig00000842.4 Phosphoinositide phosphatase SAC6 OS=Arabidopsis thaliana tig00000842_g4823.t1 0.9132065160937767 13 Cpa|evm.model.tig00000704.40 tig00000704_g3327.t1 0.9128227281050522 20 Cpa|evm.model.tig00000350.30 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor tig00000350_g24330.t1 0.9117333437382017 14 Cpa|evm.model.tig00000319.24 tig00000319_g24137.t1 0.905796534394856 15 Cpa|evm.model.tig00000944.21 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Magoh component tig00000944_g5943.t1 0.9054822285939463 16 Cpa|evm.model.tig00000615.75 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component tig00000615_g2605.t1 0.9046458624061706 24 Cpa|evm.model.tig00020903.14 Protein degradation.peptidase families.cysteine-type peptidase activities.UFM1-specific protease tig00020903_g15082.t1 0.9044039273993596 29 Cpa|evm.model.tig00000863.20 Protein modification.peptide maturation.endomembrane system.SPC endoplasmic signal peptidase complex.SEC11 catalytic component tig00000863_g4975.t1 0.901907566031882 19 Cpa|evm.model.tig00000403.78 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN8 regulatory component tig00000403_g338.t1 0.900820408579654 35 Cpa|evm.model.tig00022075.59 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.Arp2 component tig00022075_g23621.t1 0.8976519939330465 73 Cpa|evm.model.tig00021502.1 tig00021502_g22051.t1 0.8966053792530572 22 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase tig00020553_g10653.t1 0.8961378935190277 76 Cpa|evm.model.tig00000144.51 Protein modification.disulfide bond formation.endoplasmic reticulum.thiol-disulfide oxidoreductase (ERO) tig00000144_g9043.t1 0.8954664130166082 24 Cpa|evm.model.tig00020848.67 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.zeta subunit tig00020848_g14598.t1 0.894280607123217 60 Cpa|evm.model.tig00022075.51 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP4 component tig00022075_g23612.t1 0.8939890676272015 26 Cpa|evm.model.tig00020553.139 tig00020553_g10629.t1 0.8939630020445695 27 Cpa|evm.model.tig00021352.45 Cytoskeleton.cytoskeleton-nucleoskeleton linking.SUN-WIP cytoskeleton-nucleoskeleton-linker complex.Cter-SUN inner nuclear envelope component tig00021352_g20713.t1 0.8937422512806689 28 Cpa|evm.model.tig00021348.86 Translocase of chloroplast 34 OS=Pisum sativum tig00021348_g20595.t1 0.8936568358277858 29 Cpa|evm.model.tig00021348.91 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.NBS1 component tig00021348_g20598.t1 0.8934532619386618 30 Cpa|evm.model.tig00000912.28 Probable protein S-acyltransferase 23 OS=Arabidopsis thaliana tig00000912_g5433.t1 0.8925860026941712 47 Cpa|evm.model.tig00000718.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT4 regulatory component tig00000718_g3683.t1 0.8909288968241956 73 Cpa|evm.model.tig00021612.44 tig00021612_g22885.t1 0.8878343746748135 64 Cpa|evm.model.tig00000829.17 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.trafficking regulation.ERD2 K/HDEL-signature receptor tig00000829_g4659.t1 0.8875888303071734 40 Cpa|evm.model.tig00000863.17 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana tig00000863_g4973.t1 0.8873841022280851 93 Cpa|evm.model.tig00021612.50 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component tig00021612_g22890.t1 0.8866298571939284 36 Cpa|evm.model.tig00000144.166 Actin-related protein 5 OS=Arabidopsis thaliana tig00000144_g9159.t1 0.886142943698622 71 Cpa|evm.model.tig00001229.14 Protein degradation.peptide tagging.Ubiquitin-fold-modifier (UFM)-anchor addition.UFM conjugation E2 protein tig00001229_g7846.t1 0.8861330104316341 38 Cpa|evm.model.tig00021319.61 tig00021319_g20254.t1 0.8855917064461136 42 Cpa|evm.model.tig00020614.99 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.GPN1/QQT2 nuclear import factor tig00020614_g12214.t1 0.8843701337439137 62 Cpa|evm.model.tig00000829.9 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN10 regulatory component tig00000829_g4652.t1 0.8810587420226454 71 Cpa|evm.model.tig00001107.4 Deoxyhypusine synthase OS=Senecio vernalis tig00001107_g7092.t1 0.8810453421773308 44 Cpa|evm.model.tig00000704.48 Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC3 component tig00000704_g3335.t1 0.8805449476887695 50 Cpa|evm.model.tig00000073.32 Oligoribonuclease OS=Arabidopsis thaliana tig00000073_g1714.t1 0.8793855862915784 44 Cpa|evm.model.tig00000980.5 tig00000980_g6130.t1 0.8787805573587932 71 Cpa|evm.model.tig00020675.94 tig00020675_g12677.t1 0.8780204602707731 46 Cpa|evm.model.tig00020903.27 Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana tig00020903_g15093.t1 0.8762407616789785 85 Cpa|evm.model.tig00000144.174 Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana tig00000144_g9167.t1 0.8742360926704623 48 Cpa|evm.model.tig00021464.53 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase tig00021464_g21756.t1 0.8737513351550443 96 Cpa|evm.model.tig00000704.42 tig00000704_g3329.t1 0.8735348274085197 50 Cpa|evm.model.tig00020903.15 tig00020903_g15083.t1 0.8731715066360747 51 Cpa|evm.model.tig00000980.9 Intraflagellar transport protein 25 OS=Chlamydomonas reinhardtii tig00000980_g6133.t1 0.871009344592264 53 Cpa|evm.model.tig00001085.16 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB maturation.UCH1 ubiquitin carboxyl-terminal hydrolase tig00001085_g6956.t1 0.870708883606007 54 Cpa|evm.model.tig00000944.34 tig00000944_g5957.t1 0.8703035837667402 57 Cpa|evm.model.tig00001284.12 Coenzyme metabolism.iron-sulfur cluster assembly machineries.mitochondrial ISC system.transfer phase.HSCB chaperone component tig00001284_g8011.t1 0.8700112702820291 62 Cpa|evm.model.tig00022075.46 26S proteasome regulatory subunit 6B homolog OS=Arabidopsis thaliana tig00022075_g23607.t1 0.8684110268780005 76 Cpa|evm.model.tig00020848.19 DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana tig00020848_g14546.t1 0.8683926512930342 58 Cpa|evm.model.tig00000704.39 Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana tig00000704_g3326.t1 0.8679401954577232 59 Cpa|evm.model.tig00020903.16 tig00020903_g15084.t1 0.8666266424192162 60 Cpa|evm.model.tig00000912.4 tig00000912_g5410.t1 0.8658496457905843 62 Cpa|evm.model.tig00000836.8 Chromatin organisation.chromatin remodeling complexes.RVB helicase component tig00000836_g4692.t1 0.8653025970357542 72 Cpa|evm.model.tig00000444.11 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.small subunit tig00000444_g801.t1 0.8647455614807565 64 Cpa|evm.model.tig00000042.86 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.SEC22-type protein tig00000042_g15484.t1 0.8643787322919784 66 Cpa|evm.model.tig00001085.3 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component tig00001085_g6944.t1 0.8641002052443892 67 Cpa|evm.model.tig00000829.5 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase tig00000829_g4647.t1 0.8638379450771053 68 Cpa|evm.model.tig00021571.12 Protein modification.N-linked glycosylation.DPMS dolichol-phosphate-mannose synthase complex.DPMS1 catalytic component tig00021571_g22362.t1 0.8630290634128298 86 Cpa|evm.model.tig00000194.23 tig00000194_g14751.t1 0.8619216334537816 89 Cpa|evm.model.tig00000383.39 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).CAND1 adaptor protein exchange factor tig00000383_g24650.t1 0.8614954405698024 74 Cpa|evm.model.tig00000219.44 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIf basal transcription factor complex.beta subunit tig00000219_g19483.t1 0.861461976822511 75 Cpa|evm.model.tig00000241.28 U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana tig00000241_g20886.t1 0.8614451018727161 76 Cpa|evm.model.tig00000789.46 tig00000789_g4140.t1 0.861429510934734 77 Cpa|evm.model.tig00000842.19 Cell cycle.cytokinesis.phragmoplast microtubule organization.TIO Kinesin-12-regulating kinase tig00000842_g4839.t1 0.8608834515535829 78 Cpa|evm.model.tig00021348.85 tig00021348_g20594.t1 0.860603200208947 79 Cpa|evm.model.tig00001107.11 Secondary metabolism.terpenoids.terpenoid synthesis.cycloartenol synthesis.squalene synthase tig00001107_g7096.t1 0.8601468156974332 98 Cpa|evm.model.tig00020554.27 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.COMPASS histone trimethylation complex.RBL component tig00020554_g10812.t1 0.8596633632716809 81 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase tig00001107_g7091.t1 0.8592011361966445 86 Cpa|evm.model.tig00000217.26 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.NSE4 Kleisin-like bridging component tig00000217_g19159.t1 0.8588285576568205 83 Cpa|evm.model.tig00020553.156 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit tig00020553_g10647.t1 0.8586718927942898 88 Cpa|evm.model.tig00000944.23 Protein degradation.peptide tagging.Homologous-to-Ubiquitin (HUB)-anchor addition.HUB ubiquitin-fold protein tig00000944_g5946.t1 0.8575821652516967 85 Cpa|evm.model.tig00020554.138 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component tig00020554_g10917.t1 0.8569468623475853 87 Cpa|evm.model.tig00020703.9 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana tig00020703_g13111.t1 0.8564745023809902 88 Cpa|evm.model.tig00000704.52 Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana tig00000704_g3339.t1 0.8555203287129277 90 Cpa|evm.model.tig00021234.15 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED7 component tig00021234_g19389.t1 0.8554854942116505 91 Cpa|evm.model.tig00020553.158 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component tig00020553_g10649.t1 0.8552655930271139 95 Cpa|evm.model.tig00001003.41 tig00001003_g6295.t1 0.8543523022758952 96 Cpa|evm.model.tig00021234.25 Cell cycle.interphase.DNA replication.initiation.GINS DNA replication fork maintenance complex.PSF1 component tig00021234_g19399.t1 0.8543018236630799 97 Cpa|evm.model.tig00000704.36 Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana tig00000704_g3324.t1 0.8542609160377015 98 Cpa|evm.model.tig00020553.145 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component tig00020553_g10636.t1 0.8540246634098468 100