Sequence Description Alias PCC hrr Cpa|evm.model.tig00020660.34 tig00020660_g12531.t1 0.944092118908082 1 Cpa|evm.model.tig00021721.8 tig00021721_g23206.t1 0.9440393967223742 21 Cpa|evm.model.tig00020830.39 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic OS=Arabidopsis thaliana tig00020830_g14420.t1 0.9386863720154168 3 Cpa|evm.model.tig00021254.26 tig00021254_g19706.t1 0.9328118350345754 17 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease tig00000663_g2987.t1 0.9319289278477443 35 Cpa|evm.model.tig00021616.13 tig00021616_g22918.t1 0.9311618396303476 22 Cpa|evm.model.tig00020556.13 tig00020556_g10984.t1 0.9311548147051817 8 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) tig00020952_g16502.t1 0.9292727931563601 25 Cpa|evm.model.tig00000378.18 tig00000378_g24509.t1 0.929172853279785 31 Cpa|evm.model.tig00000821.30 tig00000821_g4490.t1 0.9251897360700723 39 Cpa|evm.model.tig00020660.19 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020660_g12512.t1 0.922218076979826 11 Cpa|evm.model.tig00001126.7 tig00001126_g7118.t1 0.9217564513765362 51 Cpa|evm.model.tig00021127.131 tig00021127_g18811.t1 0.9215606614511115 44 Cpa|evm.model.tig00020723.64 tig00020723_g13476.t2 0.9176486646490312 46 Cpa|evm.model.tig00020710.126 tig00020710_g13390.t1 0.9172438709877653 15 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana tig00000204_g17748.t1 0.9163495186661422 39 Cpa|evm.model.tig00000492.83 tig00000492_g1477.t1 0.9158286535215087 38 Cpa|evm.model.tig00020938.9 Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic OS=Arabidopsis thaliana tig00020938_g16134.t1 0.9157135776386134 39 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana tig00021537_g22258.t1 0.9122459686776763 44 Cpa|evm.model.tig00000863.53 tig00000863_g5008.t1 0.9117144044576534 20 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00020539_g10430.t1 0.9109583065737235 31 Cpa|evm.model.tig00021374.35 tig00021374_g21116.t1 0.9105333032903777 50 Cpa|evm.model.tig00000655.47 tig00000655_g2872.t1 0.9101625006835998 55 Cpa|evm.model.tig00001215.19 tig00001215_g7585.t1 0.9100973924450655 44 Cpa|evm.model.tig00020553.74 tig00020553_g10564.t1 0.9095688753600949 25 Cpa|evm.model.tig00020554.98 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M24 methionyl aminopeptidase (MAP1) tig00020554_g10876.t1 0.9088552431361064 26 Cpa|evm.model.tig00001302.9 tig00001302_g8094.t1 0.907632324272087 58 Cpa|evm.model.tig00000254.94 tig00000254_g22550.t1 0.9065890265063796 60 Cpa|evm.model.tig00021493.41 tig00021493_g21886.t1 0.9064634822569991 44 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana tig00020553_g10680.t1 0.9052444100122533 67 Cpa|evm.model.tig00001657.7 tig00001657_g9546.t1 0.9047068968956898 68 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase tig00001278_g7993.t1 0.9046941740096136 32 Cpa|evm.model.tig00021035.24 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana tig00021035_g17258.t1 0.9043905199369218 58 Cpa|evm.model.tig00001085.21 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana tig00001085_g6960.t1 0.9043746025959768 53 Cpa|evm.model.tig00000949.24 tig00000949_g5736.t1 0.9027917049535449 54 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana tig00001339_g8266.t1 0.9025398294514415 73 Cpa|evm.model.tig00000507.13 tig00000507_g1765.t1 0.9023194485856706 37 Cpa|evm.model.tig00020557.25 tig00020557_g11123.t1 0.9021061771008975 61 Cpa|evm.model.tig00001071.14 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar tig00001071_g6805.t1 0.9013915855925748 60 Cpa|evm.model.tig00001269.6 tig00001269_g7977.t1 0.9001743625092788 40 Cpa|evm.model.tig00000057.44 tig00000057_g63.t1 0.8989914035410301 66 Cpa|evm.model.tig00000955.24 tig00000955_g5799.t1 0.898680440573722 71 Cpa|evm.model.tig00000796.24 tig00000796_g4247.t1 0.8968429119916002 43 Cpa|evm.model.tig00020961.57 Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana tig00020961_g16679.t1 0.895973599451192 44 Cpa|evm.model.tig00020941.39 tig00020941_g16231.t1 0.8946092354546122 47 Cpa|evm.model.tig00020556.38 tig00020556_g11006.t1 0.8942789767620811 75 Cpa|evm.model.tig00020965.69 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.8937202512055064 47 Cpa|evm.model.tig00020951.45 tig00020951_g16446.t1 0.8921888655106635 56 Cpa|evm.model.tig00021238.4 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein tig00021238_g19543.t1 0.8910922440106988 49 Cpa|evm.model.tig00021617.18 tig00021617_g22945.t1 0.8909862025843228 50 Cpa|evm.model.tig00000093.105 Protein degradation.peptidase families.serine-type peptidase activities.LON protease tig00000093_g3534.t1 0.8894475977047056 86 Cpa|evm.model.tig00001310.4 tig00001310_g8153.t1 0.8879849835715423 64 Cpa|evm.model.tig00020553.186 tig00020553_g10675.t1 0.8857141258435642 53 Cpa|evm.model.tig00000269.112 tig00000269_g23774.t1 0.885522920372212 54 Cpa|evm.model.tig00000507.23 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii tig00000507_g1777.t1 0.8854477265563588 62 Cpa|evm.model.tig00000042.42 tig00000042_g15433.t1 0.8845494085516732 60 Cpa|evm.model.tig00020961.55 tig00020961_g16677.t1 0.8843308906579793 57 Cpa|evm.model.tig00000980.32 tig00000980_g6160.t1 0.8842858929709995 58 Cpa|evm.model.tig00000551.3 tig00000551_g2024.t1 0.8839242485940972 59 Cpa|evm.model.tig00020734.51 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum tig00020734_g13603.t1 0.8837543082973888 78 Cpa|evm.model.tig00020553.66 tig00020553_g10555.t1 0.8826349943562858 61 Cpa|evm.model.tig00000402.46 tig00000402_g223.t1 0.8825084953585021 62 Cpa|evm.model.tig00021579.19 Cryptochrome-1 OS=Arabidopsis thaliana tig00021579_g22443.t1 0.8821594078430661 76 Cpa|evm.model.tig00021517.16 tig00021517_g22003.t1 0.8819750950922453 64 Cpa|evm.model.tig00021489.14 Sanguinarine reductase OS=Eschscholzia californica tig00021489_g21661.t1 0.8819351591945289 77 Cpa|evm.model.tig00000254.123 tig00000254_g22583.t1 0.8807733848801655 66 Cpa|evm.model.tig00000553.12 tig00000553_g2082.t1 0.8806387548209889 67 Cpa|evm.model.tig00022104.1 tig00022104_g23814.t1 0.8804020962097953 68 Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum tig00020965_g16882.t1 0.8803128156207027 69 Cpa|evm.model.tig00000215.56 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana tig00000215_g18594.t1 0.8790543309976669 70 Cpa|evm.model.tig00021464.19 tig00021464_g21725.t1 0.8788737050342067 71 Cpa|evm.model.tig00021135.14 tig00021135_g18935.t1 0.8786224938974802 72 Cpa|evm.model.tig00000190.38 tig00000190_g13857.t1 0.8774855767759064 78 Cpa|evm.model.tig00021373.6 Peroxiredoxin Q, chloroplastic OS=Triticum aestivum tig00021373_g21073.t1 0.8770651917955719 74 Cpa|evm.model.tig00000640.27 tig00000640_g2781.t1 0.8767094143782814 75 Cpa|evm.model.tig00001368.15 ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana tig00001368_g8414.t1 0.876705144128295 76 Cpa|evm.model.tig00000900.16 Carboxyl-terminal-processing peptidase 2, chloroplastic OS=Arabidopsis thaliana tig00000900_g5370.t1 0.8764859978482892 77 Cpa|evm.model.tig00000806.35 tig00000806_g4364.t1 0.8764745103212735 78 Cpa|evm.model.tig00000404.56 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase tig00000404_g418.t1 0.8760384798230543 80 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana tig00020675_g12662.t1 0.8754883522000634 81 Cpa|evm.model.tig00000691.29 tig00000691_g3181.t1 0.875180407554786 83 Cpa|evm.model.tig00021339.48 tig00021339_g20435.t1 0.8747875841377531 84 Cpa|evm.model.tig00021517.29 tig00021517_g22017.t1 0.8741688106715854 85 Cpa|evm.model.tig00001095.9 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana tig00001095_g7025.t1 0.8740480136413833 86 Cpa|evm.model.tig00000551.6 tig00000551_g2028.t1 0.8739149909669272 89 Cpa|evm.model.tig00021108.21 tig00021108_g18310.t1 0.8737940419484237 88 Cpa|evm.model.tig00022075.74 tig00022075_g23635.t1 0.8732166225343879 89 Cpa|evm.model.tig00020603.30 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana tig00020603_g11762.t1 0.8726175827102469 90 Cpa|evm.model.tig00020553.283 Solute transport.carrier-mediated transport.MC-type solute transporter tig00020553_g10768.t1 0.8726112374929983 91 Cpa|evm.model.tig00021254.2 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor tig00021254_g19677.t1 0.8722785477616465 92 Cpa|evm.model.tig00000254.128 tig00000254_g22588.t1 0.871756068731126 93 Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 0.8716405351547493 94 Cpa|evm.model.tig00021493.51 Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana tig00021493_g21890.t1 0.8704999830984554 96 Cpa|evm.model.tig00021616.12 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) tig00021616_g22917.t1 0.869563364334773 97 Cpa|evm.model.tig00000478.28 Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana tig00000478_g1276.t1 0.8691167365617606 98 Cpa|evm.model.tig00001374.9 tig00001374_g8501.t1 0.8690474906838532 99 Cpa|evm.model.tig00020952.27 Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica tig00020952_g16501.t1 0.8689541779963061 100