Heatmap: Cluster_50 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - 2.24 - - - - 3.71 - - 2.25 - - - - - - - - - 1.79 - - - - -
Cpa|evm.model.tig00000073.54 (tig00000073_g1734.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00000076.18 (tig00020801_g13920.t1)
- - 3.26 - - - - 3.15 - - - - - - - - - - 2.91 - - - - - - -
Cpa|evm.model.tig00000093.183 (tig00000093_g3611.t1)
- - - - - 3.87 - 3.51 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000093.219 (tig00020904_g15213.t1)
- - - - - - - - - - -0.25 - -1.33 -1.81 -0.31 - -1.25 -0.18 2.36 0.63 -0.08 1.25 0.85 2.0 0.75 2.28
Cpa|evm.model.tig00000093.22 (tig00001729_g9738.t1)
- 1.04 - - -2.06 - -1.76 -0.25 -1.78 -0.87 -0.24 -1.65 -0.57 -1.35 - -0.62 - 0.08 1.09 0.69 -1.12 - 2.02 2.62 -1.38 1.58
Cpa|evm.model.tig00000101.16 (tig00000147_g9440.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000113.100 (tig00000215_g18608.t1)
0.39 - 0.93 0.65 - 0.95 - - - 0.65 - - - - - - 1.91 1.06 - - - - 3.22 0.6 0.02 -
Cpa|evm.model.tig00000114.65 (tig00020941_g16200.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000189.43 (tig00000189_g14341.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000206.1 (tig00020675_g12697.t1)
1.43 - 0.18 0.03 -0.35 - 0.15 0.9 0.07 - - - - -0.64 2.18 1.42 - 0.8 - 1.65 - - - 1.85 - -
Cpa|evm.model.tig00000219.98 (tig00020592_g11699.t1)
-0.97 -0.03 - -0.62 -0.32 -3.1 -1.89 -0.28 -0.63 -1.11 -0.26 -2.91 0.01 1.64 -0.08 -0.92 -0.22 -0.24 -0.35 0.56 0.45 -0.02 - 2.9 -1.62 -3.58
Cpa|evm.model.tig00000334.1 (tig00000334_g24099.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00000342.39 (tig00000411_g553.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00000342.71 (tig00000342_g24259.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00000430.27 (tig00000430_g611.t1)
-1.96 -1.52 -1.66 0.0 -0.96 - - 0.43 - -0.71 0.29 1.02 -0.49 -0.37 0.17 - -0.43 0.69 1.03 -0.31 -1.65 -2.05 2.19 2.25 -1.3 -2.16
Cpa|evm.model.tig00000545.26 (tig00020685_g12962.t2)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000595.5 (tig00020564_g11416.t1)
-0.48 - - -3.78 -3.84 -1.49 -1.73 -3.71 -0.34 1.23 1.51 2.01 -1.28 - -2.83 -3.59 0.41 0.12 -1.91 -1.09 0.83 -0.66 0.32 2.29 -0.48 0.44
Cpa|evm.model.tig00000605.40 (tig00000605_g2507.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000630.50 (tig00020904_g15278.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000764.4 (tig00000764_g3983.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000792.65 (tig00000792_g4216.t1)
- - - - - - - - - - - - - - - - - - 2.72 - - - - 4.28 - -
Cpa|evm.model.tig00000806.2 (tig00000806_g4328.t1)
-1.27 -1.41 - -2.63 -4.47 -3.92 -1.9 -4.28 -4.18 -4.28 -0.63 -1.75 -3.77 -1.75 -4.25 -0.33 -1.24 0.72 0.61 -0.24 -0.5 -0.38 2.92 2.9 -1.22 -0.06
Cpa|evm.model.tig00000826.31 (tig00000826_g4600.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00001049.28 (tig00020921_g15928.t1)
- - - - - - - 3.98 - - - - - - - - - 3.35 - - - - - - - -
Cpa|evm.model.tig00001128.24 (tig00001128_g7188.t1)
- - - - - - - 3.3 - - - 3.51 - 2.25 - - - - - - - - - - - -
Cpa|evm.model.tig00001177.8 (tig00001177_g7361.t2)
- - - - - 2.18 0.37 - - - - 0.03 -1.18 - 1.0 - 1.07 -1.22 - 1.35 2.01 - - 2.87 -1.69 -
Cpa|evm.model.tig00001525.14 (tig00001525_g9244.t1)
- 1.44 1.19 0.27 -0.11 0.2 - - - 0.07 - - - - - 0.33 - 2.07 1.02 - - - - 2.59 0.55 0.77
Cpa|evm.model.tig00020510.102 (tig00020510_g9887.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00020510.107 (tig00020510_g9893.t1)
- - - - - - - 4.16 - - - - - - - 3.03 - - - - - - - - - -
Cpa|evm.model.tig00020531.36 (tig00020531_g10038.t2)
- - - 1.33 -0.44 - -0.33 1.3 - 0.56 -0.41 - 1.14 - - - - 2.46 1.71 -0.71 - - - 0.96 0.57 1.16
Cpa|evm.model.tig00020538.58 (tig00020538_g10365.t1)
-0.65 -2.02 -0.65 0.09 -1.12 -0.25 -2.52 -0.9 -1.38 -1.04 0.57 -0.29 -1.29 -3.13 -1.14 -0.67 -1.0 1.28 -0.88 -0.73 -0.97 -2.76 1.59 2.96 -2.58 -0.12
Cpa|evm.model.tig00020563.108 (tig00020563_g11299.t1)
- - - - - - - - -3.12 - 0.09 -1.42 - -2.1 -3.5 - 0.4 -0.28 -1.66 -0.64 0.84 0.23 0.56 3.5 0.83 1.81
Cpa|evm.model.tig00020564.15 (tig00020564_g11415.t1)
-1.31 - -4.53 -4.16 -1.66 -2.51 -1.96 -1.9 -1.73 1.0 1.76 1.38 -0.8 -2.8 -2.46 -6.13 0.54 0.06 -1.52 -1.89 -0.39 -0.43 -0.59 2.97 0.13 0.06
Cpa|evm.model.tig00020564.17 (tig00020564_g11416.t1)
-1.1 -3.95 - - -2.03 -3.77 - -1.3 -0.23 1.11 1.44 1.48 0.06 -5.49 -2.21 - -0.22 -0.23 -0.55 -4.23 0.41 -2.21 -0.36 2.87 -0.02 0.91
Cpa|evm.model.tig00020564.28 (tig00001057_g6694.t1)
-1.31 -4.26 - - - - - -4.18 -4.27 0.92 2.17 2.24 -1.19 -4.98 -4.48 - -4.42 -5.14 - -4.72 1.11 0.12 -5.05 3.17 -2.23 0.26
Cpa|evm.model.tig00020564.29 (tig00020564_g11429.t1)
- - - - - - - - - 0.07 2.33 2.32 -1.74 - -2.26 - - -2.32 -2.18 - 1.37 -2.57 -2.55 3.28 - 0.49
Cpa|evm.model.tig00020564.30 (tig00020564_g11430.t1)
-1.93 - - - - - - -1.85 -0.98 1.09 2.1 1.42 -0.38 - - - -1.83 - - - 1.41 - -0.03 3.29 -1.74 0.12
Cpa|evm.model.tig00020604.35 (tig00020604_g11870.t1)
- - - - - - - 3.0 - - - - - - - - - 2.36 - - - 2.86 - - 2.49 -
Cpa|evm.model.tig00020614.132 (tig00000361_g24399.t1)
-1.2 -2.34 -1.59 - -1.1 0.34 -2.58 0.04 -1.5 -0.67 -0.07 -2.48 -2.69 -0.47 -1.68 0.37 -2.36 1.49 2.18 -1.97 - -0.06 - 1.95 -2.23 2.23
Cpa|evm.model.tig00020660.44 (tig00020660_g12546.t1)
- - - - - - -5.14 -5.7 - - - - - -5.24 -4.75 -5.69 -0.72 -0.88 -2.42 -2.62 2.58 0.8 -0.19 2.74 1.53 2.63
Cpa|evm.model.tig00020660.45 (tig00020660_g12546.t1)
- -2.59 - - - - - - - -4.6 -4.55 - - - -2.25 - -0.15 -0.28 -1.39 - 2.42 0.61 -0.02 3.16 1.23 2.1
Cpa|evm.model.tig00020693.2 (tig00020781_g13700.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00020693.48 (tig00020725_g13549.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020710.124 (tig00020710_g13388.t1)
- - - - - - - - - - - 2.92 - - 2.73 - - - - - 2.38 - - 2.72 - -
Cpa|evm.model.tig00020723.39 (tig00020723_g13460.t1)
- - - - - - - - - - - - - - 2.79 - - - - - 2.43 - - 3.77 - -
Cpa|evm.model.tig00020753.5 (tig00021222_g19373.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00020801.41 (tig00020850_g14676.t1)
- - - -2.6 -2.66 - - -0.34 0.84 2.68 1.98 1.71 0.12 - 0.14 - -0.92 - - - -2.54 - -0.35 1.79 -0.49 0.67
Cpa|evm.model.tig00020805.11 (tig00020805_g14019.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020816.84 (tig00020816_g14172.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020816.87 (tig00020816_g14177.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020903.5 (tig00020801_g13913.t1)
0.5 -0.17 1.58 0.33 0.07 -1.42 -1.31 -0.95 -2.51 -2.67 -0.58 -0.46 0.15 -0.81 -1.06 -0.57 -0.16 1.72 -0.91 -0.06 -0.11 -2.95 -2.93 0.67 -0.02 1.63
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020912.70 (tig00020912_g15843.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020934.56 (tig00020934_g16124.t1)
- -3.04 - - - - - - - - - - - -2.94 - - - - - - 1.33 - -3.43 4.43 -0.73 -0.08
Cpa|evm.model.tig00020934.57 (tig00001127_g7154.t1)
- - - - - - - - - - - - - -3.61 - - - -0.8 - - -0.41 -4.21 -4.33 4.51 0.6 -1.93
Cpa|evm.model.tig00020936.13 (tig00020936_g16173.t1)
3.6 - - - - - - 3.79 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020943.58 (tig00000658_g2909.t1)
- - - - - - - - - - - - - - - - - - - - - - 3.39 3.95 - -
Cpa|evm.model.tig00020952.40 (tig00020952_g16496.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00021037.24 (tig00021037_g17430.t1)
- - - - - - - 1.99 2.09 - - - - 0.29 - - - 1.35 2.37 0.5 1.16 - - 2.0 0.26 -
Cpa|evm.model.tig00021038.72 (tig00021038_g17561.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00021044.4 (tig00021044_g17640.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021045.7 (tig00021045_g17652.t3)
- - - - - - - 3.64 - - 3.76 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021070.41 (tig00021070_g17846.t1)
- - - - 1.09 - 1.59 3.01 1.38 - - - - - 1.14 - - - 2.03 - - - - - - 1.97
Cpa|evm.model.tig00021070.83 (tig00000430_g590.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021098.17 (tig00021098_g18185.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021135.48 (tig00021135_g18967.t1)
- - - - 1.22 - - - - 3.24 1.04 - - 1.38 - - - - - - - - - 3.26 - -
Cpa|evm.model.tig00021137.46 (tig00021137_g19017.t1)
- - - - - 1.7 2.0 4.04 - - - - - - - - - - - - - - - - - 1.22
Cpa|evm.model.tig00021144.8 (tig00000270_g23913.t1)
- - 2.46 - 2.13 - - - - - - - - 1.64 - - - 1.48 - - - - - 3.35 - -
Cpa|evm.model.tig00021145.3 (tig00021146_g19038.t1)
- - - - 0.94 - - 4.26 - - 0.76 - - - - - - - 1.68 - - - - - - -
-0.05 -1.11 -0.8 0.3 0.06 -0.43 -0.35 -0.91 0.4 0.44 -0.11 -0.25 0.05 0.3 -0.02 0.74 0.29 0.89 1.37 -0.08 -4.69 -4.51 -1.82 0.99 -0.19 -1.12
Cpa|evm.model.tig00021293.4 (tig00000378_g24520.t1)
- - - - - - - 4.08 - - - - - - - - - - 3.18 - - - - - - -
Cpa|evm.model.tig00021294.5 (tig00020912_g15809.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00021319.53 (tig00021319_g20246.t1)
0.44 -0.1 -0.65 -0.1 -0.16 -0.29 0.27 0.53 0.01 0.11 0.15 0.17 0.56 -1.46 -1.21 -1.57 -0.98 0.72 0.29 -0.45 -0.2 -0.81 -0.19 0.23 0.13 1.11
Cpa|evm.model.tig00021326.9 (tig00021326_g20273.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021332.24 (tig00021332_g20342.t1)
-1.31 - -1.3 - - 0.22 - -1.28 0.34 0.21 0.26 -0.2 -0.14 1.37 1.14 -0.24 - 1.02 0.66 -0.39 -2.29 - 0.42 1.4 - 2.01
Cpa|evm.model.tig00021337.2 (tig00020561_g11103.t1)
-1.31 -0.12 -0.62 -1.22 -0.64 0.72 0.15 -0.0 -0.6 -1.15 -0.52 -0.43 -1.43 -0.6 0.74 0.36 -1.74 -0.64 1.34 -0.93 0.47 0.01 -0.01 1.14 0.67 0.59
Cpa|evm.model.tig00021352.51 (tig00021352_g20721.t1)
-0.23 -0.3 -0.75 -0.22 -1.18 0.08 0.11 -1.8 0.34 0.25 0.03 0.08 -0.54 0.18 0.45 0.24 -0.58 1.1 0.86 -0.69 -0.63 -1.88 -0.47 0.88 -0.29 0.64
Cpa|evm.model.tig00021357.60 (tig00021357_g20783.t1)
- - - - - - - - - - - - - - - - - - - - - - - 4.7 - -
Cpa|evm.model.tig00021439.8 (tig00021439_g21485.t1)
- - - - - - - - - - - - - - - - - 2.73 - - - - 3.86 2.27 - -
Cpa|evm.model.tig00021440.6 (tig00021440_g21536.t1)
- 1.13 - - - -0.15 2.51 -1.27 1.0 -0.26 - -1.05 - -1.75 -1.25 - - 1.88 0.29 - - -1.56 -0.41 0.91 -0.23 2.01
Cpa|evm.model.tig00021462.24 (tig00021462_g21588.t1)
- - 2.3 0.2 - - - - - - - - - 2.06 - 0.27 0.32 - - -0.25 - -0.13 2.27 2.75 - -
Cpa|evm.model.tig00021504.12 (tig00021504_g21975.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021532.21 (tig00000507_g1770.t1)
- - - 0.69 1.44 - - - 0.87 - - - - - 0.65 - - 2.61 - - - - 1.23 3.13 0.07 -
Cpa|evm.model.tig00021534.9 (tig00021534_g22250.t1)
- - - - - - - 4.7 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 0.9 - - - - 2.96 0.69 0.08 - - 3.13 - 2.29
Cpa|evm.model.tig00021619.5 (tig00021619_g22954.t1)
0.11 -1.45 - - -1.68 - 0.66 - -0.57 -1.7 - -0.49 -1.15 0.45 0.92 1.13 0.22 0.9 1.37 1.49 -2.57 - -2.24 1.32 1.92 -
Cpa|evm.model.tig00021682.3 (tig00021042_g17593.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00022075.84 (tig00022075_g23645.t1)
1.07 -0.15 -0.75 -0.82 -1.25 -1.6 -0.18 -0.39 0.27 1.14 1.29 1.11 0.58 -0.37 -2.35 -1.9 -0.66 -2.57 -1.11 -0.7 -0.74 -1.29 -0.83 1.08 0.21 0.97

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.