Heatmap: Cluster_36 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
4h after treatment
4h after treatment,No nitrate
8h after treatment
8h after treatment,No nitrate
20C
20h after treatment
20h after treatment,No nitrate
20h after treatment,Nocodazole added
36h after treatment
36h after treatment,No phosphate
Blue light,10min after light change
Blue light,60min after light change
Bohlin
CCAP1055/1,20C
CCAP1055/1,20C,High CO2,OligoDT primed
CCAP1055/1,20C,Low CO2,OligoDT primed
CCAP1055/1,20C,Normal CO2,OligoDT primed
CCMP2561
CCMP2561 Nitrase Reductase Knockout
CCMP632
CCMP632,24h
CCMP632,48h
CCMP632,72h
CCMP632,High light acclimated WT
CCMP632,Low light acclimated WT
NEPCC640,8h,1000ppmv CO2
NEPCC640,8h,390 ppmv CO2
No light,8h after treatment
Pt-1
Pt-1 8.6
Pt-1 8.6,With nitrogen
Pt-1 8.6,Without nitrogen
Red light,0min before light change
UTEX 646,Blue light
UTEX 646,No light
-0.36 0.12 -0.34 -0.16 1.34 -0.13 0.65 -0.18 0.89 0.51 -0.53 -0.93 -3.03 -4.6 -0.24 -1.46 -0.98 1.75 0.25 -0.32 1.45 0.86 0.8 -0.69 -0.2 -3.61 -0.06 0.85 0.11 -0.55 -1.55 -0.62 -1.87 -3.57 -3.34
0.46 0.75 - 0.8 - - - - - - - - - -2.64 - - - 4.81 -0.9 - - - - - - - - 0.6 - - - - - - -
0.84 2.06 0.91 1.75 -3.42 1.07 2.32 0.02 1.52 1.73 -3.76 -4.18 - - - - - 0.44 -6.11 - - - - - -3.91 -4.28 - 2.95 -3.98 - - - - - -
0.78 2.0 0.62 2.09 -2.25 0.77 2.23 0.54 1.69 1.73 -3.36 -2.6 - - - - - 0.63 -5.32 - - - - - - -6.22 - 2.62 -0.99 -4.72 - -2.72 -2.45 - -5.74
0.74 0.17 0.51 0.41 -0.08 0.95 0.25 1.22 1.01 0.7 -0.47 -0.56 -1.05 -1.48 -0.21 -0.49 -2.27 0.85 0.08 -0.89 0.02 0.26 -1.01 0.31 -1.01 -0.16 -0.65 -0.6 -0.52 -0.28 -0.06 -0.76 -0.36 0.14 -1.23
-0.08 0.28 -0.2 0.37 -0.57 -0.18 0.51 -0.28 -0.44 -0.01 0.89 0.56 -0.59 0.71 -1.66 -1.76 -2.69 1.21 0.61 -2.03 0.38 0.74 -0.41 -0.04 -1.68 -2.31 -3.05 -0.18 -1.1 0.05 -0.55 0.72 0.64 1.11 -0.17
-0.18 0.37 0.02 0.72 -0.53 -0.05 0.7 -0.66 0.77 0.44 -1.54 -1.33 0.65 0.11 -1.48 -0.61 -1.89 0.43 0.42 0.65 -0.62 -1.11 -0.23 0.64 0.07 0.04 -0.99 0.37 0.48 0.25 -0.35 0.85 -1.3 -0.92 -0.41
-0.82 -0.4 -0.98 -0.27 -0.85 -0.57 0.09 -0.63 -0.22 -0.16 -0.03 -0.19 0.42 0.13 -1.86 -1.6 -2.76 0.78 -0.14 -0.73 -0.59 -0.58 -0.85 0.0 -0.46 -0.91 -1.02 0.49 0.18 0.68 0.37 0.84 -0.12 0.39 2.4
-2.24 -1.55 -2.58 -1.52 -0.25 -2.64 -1.57 -2.43 -1.97 -1.89 0.49 0.31 2.06 1.34 -2.83 -2.69 -4.84 0.78 -0.93 0.97 0.81 0.16 1.37 -1.18 -0.2 -0.52 -1.93 -1.27 -0.37 -0.18 -1.91 0.57 0.28 1.53 1.22
-0.53 0.13 -0.27 0.53 -0.91 -0.79 0.62 -1.69 0.2 -0.04 -0.86 -0.77 0.37 -1.88 -0.63 0.48 -1.25 1.32 1.11 1.98 0.57 -0.42 0.65 -0.66 -1.2 -0.62 -1.64 -0.35 0.39 -1.14 -1.8 0.1 -0.31 -0.27 -0.46
0.98 1.03 -0.13 0.71 0.94 1.18 0.67 0.01 0.77 0.68 -0.53 -1.15 -7.02 -3.39 -1.08 0.05 -3.39 0.77 0.12 -2.3 0.92 0.8 -0.43 -0.12 -0.78 0.59 -0.54 1.08 -5.3 -0.24 -2.0 -0.83 -0.75 -4.63 -6.42
-0.23 0.17 -0.49 0.06 -0.49 0.02 0.12 -0.25 0.24 0.38 0.89 0.52 -1.54 0.45 -1.76 -1.83 -3.36 0.93 0.18 -1.11 0.53 0.39 0.77 -0.39 -0.4 -1.62 -1.8 -0.56 -0.68 0.21 -0.87 0.98 0.48 0.88 0.19
-0.28 -0.26 -0.48 -0.25 -0.39 -0.02 -0.26 0.19 -0.1 -0.15 0.56 0.04 -0.49 0.14 -1.07 -1.31 -1.83 0.43 -0.42 -1.34 0.34 0.8 -0.53 -0.14 -1.55 -0.67 -0.74 0.56 -0.99 0.4 -0.64 0.55 -0.05 1.28 1.72
-0.19 0.31 -0.35 0.24 -0.58 -0.16 0.06 -0.79 -0.22 -0.06 0.04 0.13 0.9 -0.08 -0.1 0.27 -0.88 0.8 0.65 -0.61 -0.87 0.1 -1.18 -0.18 -0.42 -0.65 -1.13 0.07 -0.84 -0.29 -0.51 -0.1 0.15 1.41 0.77
-4.01 -2.99 -3.59 -3.27 -1.28 -4.49 -2.19 0.38 -2.57 -3.31 1.55 1.2 -2.56 -0.19 -1.42 -3.18 - 1.63 -0.85 -3.39 0.23 -0.5 -2.97 -0.9 -2.73 2.53 2.87 -4.41 -2.85 -0.37 -0.2 -3.0 0.99 -0.53 0.53
-0.33 0.63 -0.71 0.69 -0.46 0.15 1.48 -0.61 0.61 0.86 0.17 0.41 -1.05 -0.83 -0.66 -0.53 -2.19 2.0 0.98 -1.12 0.15 0.83 -0.14 -1.3 -2.33 -2.78 -3.85 0.49 -0.81 -0.98 -1.91 -1.0 0.33 -0.43 -1.05
-0.9 -0.12 -0.91 0.2 0.28 -0.52 0.71 -1.05 0.39 0.39 -1.13 -0.81 0.86 -0.33 -1.42 -0.99 -1.09 0.52 -0.04 0.64 -0.71 -0.09 -0.6 -0.56 -0.16 -0.22 -0.95 1.35 0.77 0.1 -0.67 0.98 -0.29 -0.64 0.77
-1.95 -1.45 -2.26 -1.98 -0.97 -2.2 -1.83 -3.05 -1.91 -1.66 1.52 0.9 1.92 1.07 -2.88 -2.15 -3.28 -1.2 -1.83 -1.74 -2.34 -0.88 -2.05 -1.09 -0.93 -1.05 0.43 -0.23 -2.2 0.32 -1.99 1.18 0.86 3.11 0.05
- - - - 0.19 - 0.04 0.96 0.88 - -1.82 - - - - - - 3.92 1.59 - - -0.42 - - 1.3 1.34 2.2 - -1.93 - - - - - -
-0.24 0.51 -0.69 0.58 0.02 0.15 0.62 -1.12 0.77 0.75 0.37 0.16 -0.81 -1.35 -0.36 -0.28 -2.51 0.83 0.21 -0.68 0.4 0.59 0.09 -0.48 -0.23 -0.69 -1.24 0.74 -1.36 -0.54 -0.38 -1.14 0.44 1.02 -0.88
- - - - -1.37 - -7.99 - - - 2.19 0.93 2.18 1.09 -4.11 -2.85 -4.49 3.72 -0.77 -2.16 -3.23 -4.7 -2.63 -0.14 -2.43 -6.51 -8.57 - -1.54 0.19 -7.64 0.12 0.57 0.01 -0.38
-0.16 0.56 0.76 1.22 -0.49 0.35 2.16 0.76 0.85 0.94 -2.06 -1.88 -2.66 -3.05 -1.68 0.04 -4.84 0.82 0.02 -0.07 0.82 1.49 0.44 -0.31 -1.37 -2.41 -3.93 -0.01 -1.33 -1.69 -1.62 -2.11 -1.64 -0.95 -1.4
-1.39 -0.69 -1.39 -0.52 -0.45 -1.01 -0.21 -2.05 -0.72 -0.59 -0.73 -1.89 1.76 -0.22 -0.69 -1.65 -1.25 1.6 -0.49 -1.7 -1.26 -0.31 -1.54 2.19 2.34 -3.02 -3.52 -2.52 -1.63 0.45 -1.87 0.96 -1.69 0.93 0.08
0.06 0.51 -0.19 0.51 -0.49 -0.05 0.77 -0.61 0.44 0.59 0.02 0.54 -1.52 0.05 -0.34 -0.15 -1.96 0.96 0.56 -2.03 -0.57 0.24 -0.91 -1.29 -3.72 -2.32 -3.32 1.25 -1.28 -0.29 -1.49 0.3 0.64 1.34 0.49
-0.24 0.03 -0.8 -0.86 0.37 0.5 -0.87 -1.43 0.98 0.75 0.91 0.77 -0.43 -1.27 -0.37 0.5 -1.95 -0.46 -0.42 -0.58 -0.13 0.29 0.21 -1.44 -1.6 -0.35 -1.5 1.4 -0.22 -1.58 -0.46 -3.55 0.87 1.64 -0.56
-0.26 0.24 -0.22 0.52 -0.63 -0.55 0.6 -0.51 0.41 0.06 -0.95 -0.73 -2.1 -0.37 -1.35 -0.49 -3.48 1.02 0.48 0.88 0.42 0.18 0.97 -0.07 0.9 -1.06 -2.3 0.94 0.71 -0.36 -0.25 -0.26 -0.7 -1.79 0.4
-1.73 -1.18 -0.78 -0.21 -0.26 -1.3 0.11 0.36 0.18 -0.97 -3.04 -2.97 1.66 -0.55 -2.56 -1.68 -3.53 1.12 0.6 0.27 1.02 -0.64 1.32 -2.0 -0.53 -0.16 1.2 -0.69 0.25 -1.11 -2.38 -0.7 -2.93 1.22 1.66
-0.32 -0.42 0.1 0.47 0.11 -0.15 0.46 -1.54 0.91 0.53 -1.47 -2.27 0.43 -2.84 -0.04 -0.29 0.28 1.23 -0.03 1.84 -0.25 -1.69 -1.65 0.32 0.89 1.26 -0.48 -1.24 -1.06 -0.7 -0.63 -1.09 -1.66 -0.88 -0.3
1.15 1.49 1.19 1.22 -0.94 0.81 1.04 0.73 0.46 1.07 -0.57 -0.74 -5.09 -0.69 -0.18 -1.35 -1.11 1.25 0.88 -1.76 0.29 0.47 -1.7 -1.2 -3.63 -1.1 -0.66 -3.46 -2.85 -0.51 -0.51 -0.85 -0.38 -2.23 -5.8
-3.11 -1.45 -3.33 -1.44 -0.72 -3.03 -0.9 -2.7 -1.73 -1.81 -0.27 -0.65 2.79 1.46 -4.78 -3.66 -5.46 1.73 -1.06 -2.39 -0.13 0.08 -1.18 0.73 0.37 -3.55 -4.57 -2.53 -1.08 1.34 -3.39 2.22 -0.46 0.62 0.15
-2.36 -2.78 -0.69 -1.52 1.68 -0.41 0.5 -1.28 0.8 0.75 -0.13 -0.88 0.38 -1.93 -3.33 -1.94 -4.26 1.36 -0.93 -0.76 -0.09 -0.11 0.02 -1.73 0.02 0.41 -1.15 2.18 -1.48 -0.64 -2.19 0.06 -0.26 0.83 1.01
0.3 -0.08 -0.0 -0.37 -0.63 0.02 -0.6 -0.19 -0.17 0.24 1.8 0.8 -2.35 -1.95 -0.67 -2.93 -1.22 0.72 -0.52 -1.73 0.48 1.08 -0.14 -0.3 -1.9 -1.41 -1.71 1.04 -2.01 -0.13 -0.83 0.26 0.86 0.83 0.62
-0.31 0.0 -0.93 -0.18 -0.77 -0.1 0.12 -1.15 0.17 0.2 2.5 1.94 -0.37 -0.71 -1.74 -1.1 -2.91 1.26 -0.59 -1.19 -1.47 -0.66 -1.5 -1.73 -2.66 -1.54 -2.14 0.83 -1.1 -1.09 -1.07 -1.14 1.77 0.45 -1.32
-1.49 -1.35 -2.23 -1.6 -1.19 -1.45 -1.35 -2.02 -1.07 -0.98 2.82 2.36 -2.16 -0.29 -1.55 -1.3 -2.4 2.21 -1.06 -1.01 0.02 0.81 -0.11 -1.85 -1.96 -2.0 -2.45 -0.34 -2.5 -1.48 -1.45 -1.71 1.92 -0.38 -1.52
0.54 0.45 -0.12 0.35 0.09 0.4 0.23 -0.44 0.62 0.42 -0.6 -0.6 -2.06 -0.93 0.01 -0.78 -1.25 1.5 1.01 -1.12 -0.17 -0.19 -0.76 -0.0 -0.84 -0.55 -1.53 -0.08 -1.22 -0.19 -0.44 0.34 -0.59 0.75 0.91
- - - - - -2.49 - -1.9 - - - - - - 3.19 3.2 - 2.99 3.02 -4.82 -6.51 - - - - -3.37 - - -5.14 - - - -5.73 - -
- - - - - - - - - - - - - - - - - 3.97 4.28 - - - - - - - - - - - - - - - -
-1.39 - -1.29 - 2.05 - - -1.05 - - -3.16 0.08 - -2.27 0.79 - 0.41 3.97 0.44 -3.18 -1.53 0.92 - - - 1.1 0.88 - -2.99 -1.1 -0.52 - -2.69 -1.74 -
- - - 1.09 1.29 - - - - 1.05 - - - - - - - 3.99 -0.22 0.03 -0.44 2.51 - - - - 1.72 - -0.28 - - - - - -
-1.51 -4.41 -1.57 -4.2 1.68 -1.87 -4.7 -3.3 -2.17 -0.42 0.25 0.35 - 0.24 -2.35 -2.11 -3.78 2.25 1.67 -0.8 -1.51 -0.79 2.23 -1.64 1.39 -4.31 -3.94 -0.15 1.7 -2.12 -2.59 -2.36 0.44 0.23 0.02
-3.49 -2.93 -2.67 -1.6 0.02 -4.52 -2.5 -1.55 -4.01 -4.3 0.86 -0.24 -0.33 -3.26 -0.92 -4.07 -1.53 2.79 1.46 -4.07 0.37 1.25 -3.1 -0.93 -2.03 -2.58 -1.81 -2.36 -5.26 0.99 -1.07 1.77 -0.03 2.04 1.16
0.38 1.49 0.89 1.6 -1.09 0.58 1.93 0.68 0.13 0.75 -1.61 -3.14 -1.16 -0.69 -2.87 -0.17 -3.53 1.97 1.52 -7.3 - - - -1.96 -3.46 -1.42 -1.3 -0.31 0.94 -0.75 -0.62 -0.59 -3.71 -1.69 -1.74
- - 0.92 - 2.06 1.05 - - - - - - - - - - - 4.06 -1.01 - - - - - - - - - - 0.96 - 2.96 - - -
-1.85 -1.51 -1.29 -0.88 0.1 -0.74 -0.57 -1.12 0.1 -0.02 -0.56 -0.27 2.11 0.3 -0.78 -1.09 -1.59 1.04 0.17 -0.08 1.4 0.04 1.59 -0.6 -0.63 -2.26 -3.36 -1.41 0.78 -0.9 -1.5 -0.22 -0.55 1.2 -0.19
-0.63 0.53 -0.92 0.52 0.16 0.16 0.83 -1.88 1.07 0.87 -0.92 -1.09 0.15 0.75 0.13 0.17 0.67 0.67 0.35 0.69 -1.41 -2.08 -1.11 -0.45 0.17 -1.03 -1.63 0.83 -0.17 -0.37 -0.78 0.36 -0.5 -1.46 -0.89
-0.36 -0.54 -1.03 -0.96 0.09 -0.15 -0.96 -1.23 0.02 -0.33 0.86 -0.16 -1.53 -0.68 -0.63 -1.31 -0.94 -0.01 -0.4 -1.38 1.43 -0.03 1.19 -0.08 0.21 0.4 -0.49 -0.61 -1.6 -0.42 -0.94 -0.19 0.03 2.17 0.76
1.04 1.91 0.72 1.77 -1.23 0.77 2.0 0.62 1.65 1.63 -1.39 -1.48 -5.12 -8.66 -7.46 -7.96 - 0.93 -4.9 -6.27 -5.54 -4.77 -5.13 -7.47 - - -9.26 2.75 -1.21 -4.18 -7.64 -4.39 -2.66 - -8.22
-0.35 -0.74 -0.41 0.4 -0.66 -0.29 -0.71 -0.01 -0.8 -0.84 1.97 -1.4 -2.7 -1.27 0.15 0.47 1.12 1.52 0.8 -1.76 0.06 0.81 -0.46 0.53 -1.65 -0.44 -1.39 0.47 -3.78 0.35 0.15 0.41 -1.97 -0.03 -3.17
0.22 1.07 -0.04 0.94 2.72 0.63 0.36 0.24 0.14 1.24 - - - - -1.8 - - 2.28 -0.26 - -3.62 - - 1.16 - - - 2.54 -1.43 -1.72 - - - - -
-0.76 0.39 -1.38 0.46 -2.09 -0.79 1.09 -0.67 -0.29 0.07 -1.22 -1.46 -6.15 -3.38 0.1 -0.34 0.22 1.89 0.54 -0.87 -0.02 1.45 -0.31 -0.87 -3.41 -1.65 -2.82 1.04 -0.49 0.93 -1.91 1.83 -0.68 -0.68 -0.18
-1.24 -0.63 -1.06 -0.3 -0.32 -0.96 0.05 -1.24 -0.42 -0.45 1.32 1.09 -0.55 0.49 -2.3 -1.62 -5.02 0.88 0.04 -0.53 0.81 0.65 0.77 0.1 -0.03 -2.31 -2.45 -1.47 -0.51 0.59 -1.06 1.53 1.26 -0.13 -0.22
0.31 0.34 -0.0 0.16 -0.05 0.22 0.25 -0.39 0.18 0.3 -0.86 -0.56 -0.46 -0.45 -0.19 -0.6 0.66 0.06 -0.17 0.11 0.36 0.57 0.03 0.4 -0.9 -0.7 -0.87 -0.14 -1.25 0.27 0.29 0.45 -0.81 0.72 -0.06
0.48 0.12 0.03 0.13 0.63 0.48 0.34 -0.26 0.15 0.38 -1.57 -1.89 -1.62 -0.61 0.21 -0.79 0.78 0.06 -0.17 0.69 0.45 0.52 -0.05 0.15 -1.1 -0.34 -0.05 -1.24 -1.55 0.69 0.77 0.93 -1.28 -0.86 -1.82
-1.47 - -3.0 -2.98 -2.16 -0.97 -0.12 -0.43 - - -0.26 0.68 - 1.1 1.98 -0.79 - 3.3 1.45 0.9 -2.25 - -0.99 -0.9 -2.91 -2.32 - -1.24 1.37 -1.4 -1.01 -1.35 -0.16 -1.65 0.46
-1.49 -0.21 -1.45 -1.17 1.01 0.27 - - - 1.41 0.52 -0.73 - - - - - 2.79 -0.73 -1.66 0.75 0.01 1.1 - - -0.81 3.37 - -1.28 - - - 0.14 - -
- - 0.76 0.99 - - - 1.0 - - 1.11 1.79 - - - - - 3.75 1.04 - - - - - - 0.32 1.61 - 0.81 - - - 1.13 - -
-2.11 -1.43 -3.73 -3.38 0.01 -0.54 -1.65 - -1.18 -1.83 1.51 1.63 0.71 1.64 0.06 - -0.49 2.97 -0.27 -1.42 1.07 0.27 1.23 -3.44 -2.62 -0.85 -2.75 -3.56 -4.4 -3.44 -2.84 - 1.47 -2.37 -4.56
0.3 -0.03 -0.38 0.17 0.41 -0.53 0.22 -0.08 -0.3 -0.18 -1.66 -2.44 -3.18 - -0.36 -3.61 -3.19 2.61 -0.23 -1.07 1.18 0.32 1.89 1.06 1.87 -4.71 -0.87 -0.58 -0.76 -1.78 -2.49 -1.55 -1.44 -4.75 -5.25
-0.75 0.04 -0.75 0.28 -0.97 -0.32 0.53 -0.86 0.6 0.43 -0.16 -0.39 0.35 -1.58 -1.26 -0.32 -2.94 1.48 0.42 0.11 -0.03 -0.31 -0.28 -0.55 -1.79 -2.11 -2.59 1.67 -0.06 0.33 -2.54 0.81 -0.16 0.15 1.16
0.23 0.6 -0.04 0.56 -0.28 0.47 0.93 0.05 0.49 0.43 -1.15 -0.6 1.1 -0.73 -1.16 -0.9 -2.51 1.22 1.12 -1.03 -2.81 -2.4 -3.41 -0.69 -3.2 -0.97 -1.23 0.49 0.6 -0.0 -0.14 0.25 -0.33 1.0 0.08
-3.14 -1.77 -2.99 -1.75 -1.33 -2.2 -1.19 -2.25 -1.93 -1.69 -1.82 -3.04 2.99 -1.85 -2.55 -2.57 -2.57 2.1 0.84 1.94 0.19 -0.5 -0.48 -0.5 -1.5 -2.35 -4.16 -1.7 0.9 -1.27 -2.79 -0.47 -2.52 1.54 1.54

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.