Heatmap: Cluster_34 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
Cpa|evm.model.tig00000114.66 (tig00000114_g6073.t1)
- - - - - - 3.13 - - - - - - 1.86 - - - - - 3.76 - - - - - -
-3.09 -3.65 -3.0 - - -3.32 -2.22 -2.34 - - -3.26 -2.12 -3.33 0.13 1.32 2.11 1.56 1.41 2.93 1.42 - -2.62 - -3.33 -1.54 -1.65
Cpa|evm.model.tig00000158.8 (tig00021332_g20343.t1)
- -1.45 - -0.95 - - -1.02 1.31 - - -1.02 - - 0.64 1.07 1.52 0.18 1.99 2.39 1.48 - -0.35 -1.41 - - -0.29
Cpa|evm.model.tig00000202.2 (tig00000202_g16612.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00000203.1 (tig00021441_g21563.t1)
3.38 - - - - - - 2.14 - 1.84 - - - - - - - - - 2.92 - - - - - -
- - 1.96 - - - - - - - - - - - 0.33 2.36 - 0.74 1.66 2.41 -0.58 - 1.36 - - 1.23
Cpa|evm.model.tig00000215.81 (tig00000215_g18617.t1)
3.71 - - - - - - - - - - - - - - - - - - 3.69 - - - - - -
Cpa|evm.model.tig00000262.5 (tig00021071_g17953.t1)
- - - - - - - - - - 1.82 - - - 1.8 - - - - 3.66 - 2.67 - - - -
Cpa|evm.model.tig00000270.10 (tig00000270_g23915.t1)
- - - - - - 2.78 - - - - - - - - - - - - 4.26 - - - - - -
Cpa|evm.model.tig00000292.12 (tig00000292_g23864.t1)
1.77 - 1.82 - - - 0.71 0.72 0.75 - 1.67 - - - - 0.68 - 1.35 1.53 1.95 - - - - - -
- -1.92 - - - - 0.3 - -1.04 - - - -1.66 -0.05 0.82 1.68 2.1 1.26 2.72 1.37 -1.03 - - -0.57 -1.11 -1.63
Cpa|evm.model.tig00000385.12 (tig00000157_g9597.t1)
- - - - - - - - - - - - - - - - - - - 3.79 - - - - - 3.61
Cpa|evm.model.tig00000411.18 (tig00021038_g17585.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000430.32 (tig00000430_g615.t1)
- - - - - - - - - - -2.9 - - 2.51 1.74 2.15 1.67 0.66 1.34 0.74 1.13 -0.3 -3.57 - - -1.46
Cpa|evm.model.tig00000444.41 (tig00000444_g831.t1)
-0.14 -0.63 -1.02 -3.01 -1.56 -0.72 1.49 -0.5 -0.15 -0.39 -1.13 -0.98 -0.38 -0.5 -0.09 0.99 -0.05 0.91 1.02 2.44 -1.07 -3.48 -0.56 -2.48 -0.71 -
Cpa|evm.model.tig00000459.85 (tig00000459_g1151.t1)
1.91 - - - - - - - - - - - 1.17 - - - - 1.11 0.42 3.56 -0.21 - - 1.38 - 0.27
Cpa|evm.model.tig00000526.1 (tig00000526_g1895.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
2.73 - - - 2.3 - - - - - - - - - - - - - - 3.85 - - - - - -
Cpa|evm.model.tig00000704.37 (tig00000704_g3326.t1)
-2.82 -2.01 -0.54 0.21 -0.4 1.69 0.08 - -0.87 - -2.03 - -2.06 0.74 1.54 0.45 1.66 1.19 1.39 1.27 -3.4 -1.72 -3.33 -3.06 - -0.64
-1.53 -2.0 -2.32 -2.95 -0.98 -0.77 -1.68 -1.57 -2.31 -1.39 -2.89 -1.8 -1.69 1.5 1.59 1.8 1.42 1.04 1.58 1.59 -1.38 -2.71 -4.28 -4.0 -0.84 -0.43
1.0 - - - - 1.21 - - - - - - - 0.72 - - 1.53 1.74 - 3.79 - - - - - -
Cpa|evm.model.tig00000788.11 (tig00000788_g4071.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000889.29 (tig00020824_g14264.t1)
- - - - - - - - - 1.05 - - - 1.52 - 1.06 - 0.42 3.21 3.07 - - - - - -
Cpa|evm.model.tig00000900.40 (tig00001420_g8690.t1)
- - - - - - - - - 3.29 - - - - - - - - - 4.02 - - - - - -
Cpa|evm.model.tig00000946.3 (tig00000946_g5561.t1)
- - - - - - -0.54 - -0.06 - -0.74 -1.65 - 2.07 2.43 0.54 2.35 0.36 1.07 1.5 -2.68 - -2.12 -1.85 -1.39 -
Cpa|evm.model.tig00000946.8 (tig00000946_g5566.t1)
- - - - - - - - - - - - - 1.63 2.55 - 1.77 - 3.44 1.47 - - - - - -
- - - - - - - - -0.71 - - - - 2.01 2.12 1.61 2.61 1.73 0.14 1.05 -1.14 - - - - -0.12
Cpa|evm.model.tig00001372.6 (tig00001372_g8456.t1)
0.15 -1.53 -0.69 -2.41 -2.07 -0.52 -0.02 -0.95 -0.49 0.3 -0.46 -0.63 -0.87 0.85 0.84 1.57 0.31 0.93 1.19 0.48 -1.89 0.09 -3.31 -1.17 0.06 0.16
-2.09 - - - -1.28 - -2.08 - - - -0.8 - - 1.56 1.78 2.13 0.56 1.39 1.76 1.77 -2.05 - -0.94 0.53 -0.95 -2.66
- - - - -2.47 - - - - - - - - 1.71 1.82 1.76 1.3 1.49 2.18 0.52 -1.66 0.65 -4.07 -1.47 -1.15 0.7
-4.27 - -5.33 -4.48 -3.53 -5.65 -5.55 -3.76 -5.57 -3.61 -5.63 -3.46 -5.66 1.77 2.15 1.57 0.86 0.78 2.2 1.43 -1.35 -0.12 -2.31 -0.33 0.04 -1.04
- - - - - - -0.7 - - - - - - 1.46 1.56 2.16 1.31 1.91 1.16 1.72 -0.29 0.29 0.02 - - -1.4
Cpa|evm.model.tig00001387.6 (tig00000478_g1267.t1)
- - - - - - - - - - - - - 2.8 2.62 1.87 1.04 0.39 1.55 1.55 - - - - - -
- -1.69 - -3.36 - -3.54 - - -2.38 -3.49 -3.43 -3.35 - 1.94 1.99 1.44 1.49 1.34 2.04 1.1 -1.33 -1.09 -1.59 -0.52 -1.11 -0.88
Cpa|evm.model.tig00020516.4 (tig00020781_g13699.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 2.73 1.89 0.94 -0.79 1.07 1.48 2.98 - -1.42 - - - -
Cpa|evm.model.tig00020563.95 (tig00020563_g11285.t1)
2.29 - - - - - - - - - - 2.25 - - - - - - - 3.42 1.21 1.76 - - - -
Cpa|evm.model.tig00020564.45 (tig00020564_g11444.t1)
- - - - - - - 1.98 2.0 - 1.92 - - - - - - - - 3.22 0.97 1.56 - - - -
Cpa|evm.model.tig00020597.2 (tig00021339_g20447.t1)
0.55 - -0.89 - -0.7 - -0.69 0.32 0.15 - - - - 2.14 -0.14 1.97 1.34 -0.48 1.84 2.11 - - - - - -
Cpa|evm.model.tig00020608.5 (tig00000114_g6075.t1)
- - - - - - - - - 3.05 - - - - - - 3.4 - - 2.84 - - - - - -
Cpa|evm.model.tig00020608.8 (tig00020816_g14217.t1)
-1.85 -1.85 - - - 0.26 -1.54 -1.96 - -2.03 -1.04 - -1.55 0.91 1.17 2.1 1.05 0.02 1.98 2.25 -1.16 -1.31 -0.33 -2.09 -1.63 -2.57
Cpa|evm.model.tig00020611.17 (tig00020611_g12113.t1)
- - - - - - - - - - - - - - - - - - 3.85 3.53 - - - - - -
Cpa|evm.model.tig00020614.53 (tig00020614_g12164.t1)
- - 2.25 - - 1.26 - - 2.3 1.2 - - - - - - - 1.1 1.17 2.51 - - - - 0.63 -
Cpa|evm.model.tig00020688.8 (tig00020688_g12993.t1)
-1.87 1.22 0.74 -2.72 -0.07 -1.09 -0.01 -2.59 - -0.68 -1.28 - - 0.91 2.29 1.95 0.71 -0.09 0.73 1.43 - -3.2 - -2.38 -3.48 -
Cpa|evm.model.tig00020693.43 (tig00021017_g17220.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00020824.42 (tig00020938_g16152.t1)
-0.23 - - -1.21 -0.14 - -0.05 - - 0.07 -1.23 - - 1.74 1.77 1.01 -0.93 0.7 2.21 1.85 - - -0.5 - - 0.62
Cpa|evm.model.tig00020875.2 (tig00020875_g14880.t1)
- - - - - - - - 3.87 - - - - - - - - - - 3.51 - - - - - -
Cpa|evm.model.tig00020903.64 (tig00000404_g415.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00020911.21 (tig00020911_g15723.t1)
3.04 - - - - - - - - - - - - - - - - - - 4.15 - - - - - -
Cpa|evm.model.tig00020927.77 (tig00020904_g15228.t1)
- -0.26 -0.66 -1.58 -0.47 -1.02 -3.04 -0.75 -3.26 -1.01 -3.32 - - 1.85 2.32 1.54 0.8 -0.33 1.66 1.36 -1.63 -0.59 - - -0.28 -
Cpa|evm.model.tig00020943.62 (tig00021589_g22719.t1)
0.49 -1.55 1.23 0.8 -2.1 -0.66 - 1.42 0.2 1.13 -0.25 - 0.95 0.9 -0.89 -0.07 -0.08 -0.36 - 2.1 -0.2 - - -1.9 - -
Cpa|evm.model.tig00020951.13 (tig00020725_g13553.t1)
0.35 - - - - - 0.57 0.58 1.79 1.59 1.37 -0.53 - -0.8 -0.89 2.15 -0.41 -0.05 1.08 0.71 - - - - - -0.06
Cpa|evm.model.tig00020961.85 (tig00020614_g12164.t1)
-3.0 -2.24 - - -0.92 -0.77 -3.13 - -3.09 -1.86 -1.4 - -1.03 1.8 1.23 1.68 -0.14 0.68 2.08 1.53 -0.84 -3.54 -2.52 -0.92 -2.01 1.54
Cpa|evm.model.tig00021013.23 (tig00021013_g17053.t1)
- - 0.79 -0.71 1.49 0.22 0.41 - -0.8 -0.88 - 0.3 - - - - 0.77 0.66 1.95 2.53 -0.78 - -0.45 0.81 - -
Cpa|evm.model.tig00021014.12 (tig00001269_g7973.t1)
- - - - - - - - - - 2.88 - - - - - - - 2.8 3.55 - - - - - -
Cpa|evm.model.tig00021036.100 (tig00021036_g17387.t1)
-0.0 - - 0.26 - - - - - - 0.31 - - 0.72 - 1.84 1.54 -0.44 1.64 2.98 -0.68 1.05 - - - -
Cpa|evm.model.tig00021036.68 (tig00000342_g24247.t1)
- - -0.83 - - - -0.82 - -0.84 - - - - 2.21 2.13 1.46 1.95 - 1.62 1.67 - -1.08 - -0.23 - 0.18
Cpa|evm.model.tig00021036.78 (tig00021036_g17362.t1)
-0.47 0.74 -0.34 -1.38 -0.49 -1.21 0.68 -0.34 0.57 0.78 1.65 0.23 1.02 0.28 -1.71 -0.47 -1.23 -2.2 1.58 1.79 - - - - - -
Cpa|evm.model.tig00021036.80 (tig00021036_g17364.t2)
-0.61 -0.56 - 0.13 -2.3 -1.95 0.33 0.89 -1.12 1.39 0.94 0.22 -1.31 0.84 -0.03 0.94 1.48 -1.09 1.19 1.67 - - - - - -
Cpa|evm.model.tig00021036.84 (tig00021036_g17370.t1)
0.36 -0.13 -1.26 -1.19 -1.07 - -0.06 0.9 1.38 1.65 1.05 - - 1.27 - 1.02 - 0.25 1.83 1.41 - - - - - -
Cpa|evm.model.tig00021038.24 (tig00021038_g17514.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021038.25 (tig00021038_g17515.t1)
0.62 - -2.13 - - - - -1.17 - -1.24 -2.2 -1.03 -2.23 2.25 2.51 1.24 1.68 0.3 0.61 1.8 -2.06 - - - - -
Cpa|evm.model.tig00021046.13 (tig00021046_g17793.t1)
- - - - - - - - - - - 2.58 - - - - 2.72 - - 3.75 - - - - - -
Cpa|evm.model.tig00021111.12 (tig00021111_g18394.t1)
- - - - - - - - - 3.8 - - - - - - - - - 3.59 - - - - - -
Cpa|evm.model.tig00021128.18 (tig00000704_g3297.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021137.47 (tig00021137_g19018.t1)
- - - - - - - 3.34 - - - - - - - - - - - 3.99 - - - - - -
Cpa|evm.model.tig00021181.26 (tig00021014_g17106.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021222.1 (tig00021222_g19358.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021247.5 (tig00021247_g19661.t1)
- -1.55 0.53 -1.72 - - - - -0.2 -0.9 1.16 -1.69 - 2.58 1.43 2.0 -1.56 0.23 0.75 0.94 -1.78 -0.61 -2.46 -1.9 -0.43 -
Cpa|evm.model.tig00021257.26 (tig00021257_g19767.t1)
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021339.60 (tig00021339_g20448.t2)
- - - 2.65 - 1.72 0.34 - -0.13 -0.16 - 0.99 -0.22 - - - - -0.65 - 2.73 0.2 1.08 - - - -
Cpa|evm.model.tig00021586.13 (tig00020941_g16203.t1)
- - - - - - -0.21 1.38 - - - - 0.02 2.55 - 1.54 1.37 1.02 1.1 2.58 - - - - - -
Cpa|evm.model.tig00021591.5 (tig00021591_g22794.t1)
- -0.59 -0.03 -0.49 -0.18 -1.9 0.03 - -0.51 -1.22 -1.14 -2.04 -0.98 0.81 1.24 0.0 0.78 0.74 1.94 0.99 - -0.06 -1.66 0.36 -0.81 0.74
Cpa|evm.model.tig00021758.2 (tig00021758_g23396.t1)
0.59 1.03 1.12 - - - - 1.95 - 0.8 0.82 1.0 - 1.53 - 1.87 - - - 1.57 - 0.49 - - - -
Cpa|evm.model.tig00022075.2 (tig00020918_g15895.t1)
0.67 0.04 -0.68 -0.83 - - - -0.7 -0.86 -1.02 -0.94 - 0.26 1.25 0.88 - - -1.45 -0.08 2.57 1.01 1.64 - - -1.58 0.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.