Heatmap: Cluster_102 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
Cpa|evm.model.tig00000042.202 (tig00020849_g14656.t1)
0.37 -0.64 -0.55 -0.32 0.05 -0.17 0.12 -0.26 0.03 -0.31 0.84 1.49 0.36 -0.14 0.88 1.63 0.62 -1.53 -0.33 0.69 -2.24 -2.29 -4.06 -3.88 -2.07 -3.35
Cpa|evm.model.tig00000057.141 (tig00020936_g16176.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00000057.92 (tig00000057_g111.t1)
0.05 -0.1 -0.1 - -0.79 - -1.63 -1.82 -1.71 -0.35 - -0.14 -0.4 - -1.93 - - -0.09 -2.19 -2.22 2.48 1.1 0.35 0.08 2.26 1.42
-0.16 1.53 -0.07 -0.22 - 0.84 -0.09 - 1.39 -0.39 2.45 2.38 - - -0.55 0.64 - -0.45 - -0.62 - - - - - -
Cpa|evm.model.tig00000076.143 (tig00000076_g2436.t1)
- - - - - - - - - - 4.21 - - - - - 2.9 - - - - - - - - -
Cpa|evm.model.tig00000114.67 (tig00000114_g6075.t1)
0.26 0.52 - - - 0.28 - - 1.93 - 1.24 2.38 - 0.11 0.02 2.95 - - - -0.05 - - - - - -
Cpa|evm.model.tig00000128.27 (tig00021589_g22746.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00000133.11 (tig00000133_g7678.t1)
-0.57 -1.64 -1.51 -0.85 0.37 -0.12 0.38 0.14 0.09 0.78 1.85 1.58 0.33 -0.12 0.48 -0.2 -1.6 0.0 -0.2 -2.29 -5.8 -2.79 -1.28 0.84 -1.71 -0.81
Cpa|evm.model.tig00000158.128 (tig00000158_g10218.t1)
-1.01 0.58 -2.23 -1.38 -1.65 -0.86 - 0.8 -1.47 -1.57 -0.19 -0.36 -0.27 0.43 0.83 0.05 1.01 -0.69 0.08 -1.54 1.38 -1.22 1.11 -0.85 1.57 -0.45
Cpa|evm.model.tig00000158.2 (tig00000382_g24590.t1)
- - - - - - - - - -0.44 -0.38 - - -0.98 -0.64 -0.25 -0.16 -0.93 -0.4 - 2.68 1.32 2.44 - 2.58 -
Cpa|evm.model.tig00000158.35 (tig00000158_g10147.t1)
1.85 - - - - - - - - - 3.14 2.25 2.59 - - - - - - - - - 1.49 - - -
Cpa|evm.model.tig00000204.81 (tig00000204_g17749.t1)
0.52 0.72 -0.2 - 0.87 -1.3 - 1.18 - 0.78 2.2 2.18 -1.42 - - - - - -0.35 -1.64 0.16 - - 1.56 - 0.18
Cpa|evm.model.tig00000215.3 (tig00000042_g15670.t1)
-0.72 0.03 0.58 0.24 0.06 -1.35 0.68 0.44 0.68 0.29 0.19 -0.04 0.07 -0.14 -1.12 -0.4 0.82 -0.91 -0.73 0.8 - - -0.86 -3.05 1.7 -0.65
- - - 2.37 - 2.3 - - - - - 3.4 - - - 2.43 - - - - - - - - - -
Cpa|evm.model.tig00000237.21 (tig00000237_g20469.t1)
0.1 -0.02 -1.04 -1.55 0.66 -0.49 -0.69 -1.08 -0.56 -0.53 0.44 -0.52 -1.57 0.51 -3.71 0.59 -0.01 0.43 0.96 -1.0 1.05 - 0.99 0.32 0.98 -0.14
Cpa|evm.model.tig00000248.60 (tig00000248_g21822.t1)
-0.32 0.42 -2.0 -3.04 -0.66 0.04 0.77 0.94 2.25 1.18 1.61 1.47 0.67 - -3.22 -3.23 - -0.79 0.61 -1.46 - - -3.5 -1.18 -1.97 -1.7
Cpa|evm.model.tig00000269.71 (tig00000269_g23732.t2)
2.4 - - - 1.41 - - - - - 2.67 - - - - - - - 1.63 - - 1.31 2.04 - 1.03 -
Cpa|evm.model.tig00000331.15 (tig00021244_g19565.t1)
1.21 - - 2.53 - 1.42 - - - - - - - - - - 3.07 - - 2.14 - 1.26 - - - -
Cpa|evm.model.tig00000339.19 (tig00000339_g24181.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000342.72 (tig00000114_g6075.t1)
- 1.91 - - - - - 2.98 1.82 - 1.78 2.88 - - - - - - - - - - - - - -
Cpa|evm.model.tig00000361.10 (tig00000903_g5529.t1)
0.39 0.01 0.04 1.5 0.0 -0.18 -0.86 -0.51 -0.19 -1.25 1.25 0.73 0.86 -2.78 1.57 1.31 0.2 -1.34 0.38 -0.33 - -2.58 - - - -2.77
Cpa|evm.model.tig00000361.12 (tig00000361_g24365.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000405.3 (tig00020531_g10042.t1)
- 0.03 - 0.23 - -1.38 - -0.37 0.27 0.85 -1.43 -0.29 0.81 - -0.56 -1.41 -0.17 -0.04 - -1.77 1.46 1.57 1.44 -0.79 1.73 0.2
Cpa|evm.model.tig00000443.1 (tig00021762_g23454.t1)
- 2.12 - - - 1.77 1.88 - - - 3.41 1.96 - - - - - - - - - - - - - -
Cpa|evm.model.tig00000443.24 (tig00000443_g781.t1)
- - - 1.07 - - 1.32 - - 1.0 3.38 2.81 - 0.95 - - - - - - - - - - - -
-0.38 1.73 - 0.01 - - 2.11 0.82 - 2.04 - 1.61 1.63 - -0.16 - 0.16 - - 1.35 - - - - - -
Cpa|evm.model.tig00000514.17 (tig00020849_g14656.t1)
- - - - - - - - - - 4.7 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000526.14 (tig00000526_g1908.t1)
- - 3.11 - - - - - - - - 3.81 - - - - - - 1.76 - - - - - - -
Cpa|evm.model.tig00000540.21 (tig00000540_g1936.t1)
- - - - - - - - - - - 3.79 - - 3.6 - - - - - - - - - - -
Cpa|evm.model.tig00000555.4 (tig00000555_g2131.t1)
- - - - - 1.73 - - - - - 3.41 - 1.13 - - - 1.18 1.37 - 2.32 - - - - -
Cpa|evm.model.tig00000555.9 (tig00000555_g2136.t1)
0.29 -0.74 - 1.06 0.2 0.14 - - - -1.04 -1.03 0.7 - -0.16 - -0.85 - 0.77 0.0 - 2.22 -1.39 1.16 -1.09 1.54 1.28
Cpa|evm.model.tig00000571.33 (tig00000571_g2185.t1)
- - - - - - - - - - 3.71 - - - 3.69 - - - - - - - - - - -
Cpa|evm.model.tig00000600.23 (tig00000600_g2283.t1)
- - - 0.31 - - - 1.19 0.22 - 2.77 0.34 2.21 - - 0.37 - 0.88 1.68 - - - - - 1.18 -
Cpa|evm.model.tig00000630.22 (tig00000630_g2710.t1)
- - - - - - - - - - 4.7 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000654.25 (tig00000654_g2819.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000741.11 (tig00000204_g17680.t1)
2.88 - - - - - - - - - - 3.0 - - - - - - - 2.57 - - - - 2.22 -
Cpa|evm.model.tig00000767.32 (tig00000767_g3977.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000946.13 (tig00021318_g20133.t1)
2.47 - - - 0.8 2.39 - 1.92 0.89 - - - - - - - - - 0.89 2.58 - - - - - -
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00001000.4 (tig00001000_g6165.t1)
- - - - - - - - - - 3.85 - - - - - - - - - - 3.53 - - - -
Cpa|evm.model.tig00001001.7 (tig00001001_g6198.t1)
1.31 - 1.85 3.28 - - - - - - - 1.73 2.78 - - - - - - - - - - - - -
Cpa|evm.model.tig00001024.1 (tig00001024_g6310.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00001025.1 (tig00000293_g23868.t1)
0.55 -0.03 -0.03 0.22 0.66 -0.23 0.4 1.23 -0.37 0.15 1.02 1.33 0.88 -1.19 -0.13 0.5 0.39 -1.6 -3.65 0.35 - -2.82 - -3.94 -0.57 -1.3
Cpa|evm.model.tig00001025.2 (tig00020849_g14656.t1)
0.38 0.03 -0.15 0.38 0.11 -0.5 0.59 0.6 0.7 0.64 1.1 1.37 0.97 -0.59 0.31 0.84 -0.24 -1.35 -2.12 0.25 -3.55 -3.36 -5.67 -6.98 -3.07 -2.97
Cpa|evm.model.tig00001027.4 (tig00021758_g23403.t1)
- - - - - 3.59 - - - - - 3.8 - - - - - - - - - - - - - -
Cpa|evm.model.tig00001128.29 (tig00001128_g7192.t1)
0.36 - - - - - 0.68 1.79 0.66 0.55 - 3.58 - 1.02 - - - - - - - - - 0.57 - 0.16
Cpa|evm.model.tig00001269.2 (tig00001269_g7973.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020515.14 (tig00020515_g9782.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020519.3 (tig00020519_g9972.t1)
- 1.26 0.01 0.96 1.76 1.91 1.12 - - 0.93 2.26 - - - - - 1.24 -0.53 - 0.68 - - - - - -
Cpa|evm.model.tig00020528.8 (tig00020528_g9984.t1)
-0.04 0.03 -0.12 -0.21 0.65 -0.69 0.87 -0.01 1.13 0.44 1.51 1.09 0.34 -0.12 0.34 -0.27 -1.6 -0.43 -0.32 -0.61 -1.5 -3.37 -2.05 -0.2 -2.37 -3.02
Cpa|evm.model.tig00020539.23 (tig00000042_g15678.t1)
- - - - - 3.16 - - - - 4.09 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020553.3 (tig00021318_g20133.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020563.144 (tig00020553_g10726.t1)
- 1.92 - - 1.98 - - - 1.77 1.67 1.72 1.9 2.22 - - - - - - - - - - - - -
Cpa|evm.model.tig00020564.66 (tig00020564_g11469.t1)
2.16 - - - - - - - 2.15 1.91 2.96 - 2.46 - - - - - - - - - - - - -
- 2.48 - - - - - - - - - 3.22 1.92 - - - 1.76 0.78 - 1.15 - - - - - -
Cpa|evm.model.tig00020590.2 (tig00020590_g11625.t1)
- - - 2.61 - - - 2.87 - - - 2.76 2.55 - - - - - - - - - - - - -
Cpa|evm.model.tig00020604.4 (tig00020604_g11842.t1)
2.2 - - 2.58 - - - - - - 2.43 - - - - - 2.48 - 2.15 - - - - - - -
Cpa|evm.model.tig00020616.63 (tig00000443_g769.t1)
0.1 0.11 - - - 2.67 1.93 1.09 1.84 1.17 2.22 0.06 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020675.46 (tig00020675_g12628.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020734.8 (tig00021586_g22684.t1)
- - - - - - - - - 3.69 3.71 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020746.20 (tig00020746_g13677.t1)
1.7 - - - - - - 0.31 0.41 1.34 2.4 - - - - - - - 0.35 - 1.57 0.03 2.08 1.03 -0.25 -
Cpa|evm.model.tig00020802.2 (tig00020801_g13992.t1)
1.36 - -1.31 - 1.33 0.44 - -0.36 0.28 -0.4 0.97 0.78 0.1 -0.9 - 0.25 - 1.15 -1.39 -1.69 1.38 -1.57 0.61 -0.02 0.36 -1.89
1.48 - - 0.27 1.48 - - 0.22 2.22 0.15 2.93 1.89 - - -0.06 - - - - - - - - - - -
Cpa|evm.model.tig00020824.12 (tig00020824_g14239.t1)
- - - - - - - - - 3.6 - 3.79 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020824.17 (tig00020824_g14245.t1)
1.91 -0.24 -0.49 - 1.1 -0.24 -0.48 - 1.64 2.61 2.27 1.19 - - - - - - -0.56 - - - - - - -
Cpa|evm.model.tig00020830.22 (tig00020830_g14402.t1)
-1.42 -3.82 -4.07 -2.08 -1.59 -1.88 -1.53 -2.08 2.2 2.01 2.67 2.44 -0.45 -1.67 1.12 - - - - - -3.02 - - -1.88 - -4.65
Cpa|evm.model.tig00020849.24 (tig00020849_g14656.t1)
0.63 0.09 0.49 -0.05 -0.15 -0.31 0.12 -0.51 0.4 0.61 1.04 1.95 0.97 -0.62 0.74 0.62 -0.12 -2.22 -2.66 0.14 - -3.02 - - - -1.28
Cpa|evm.model.tig00020849.25 (tig00021013_g17049.t1)
0.05 -0.73 -0.03 -0.05 -0.18 -2.22 -0.86 -0.32 0.02 1.32 1.05 1.39 1.58 -2.23 -0.73 0.18 0.86 -0.14 -0.4 0.13 - -1.48 - -0.33 -1.09 -0.69
Cpa|evm.model.tig00020849.26 (tig00020564_g11447.t1)
-0.09 0.17 0.92 - - - 0.12 -0.19 0.94 - -0.15 2.35 - 1.63 0.83 -0.1 - 0.57 0.75 -0.46 -1.02 - - - -0.76 0.5
Cpa|evm.model.tig00020855.3 (tig00000293_g23868.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020911.26 (tig00020911_g15728.t1)
- - 0.85 - - - - - - - 3.11 0.94 3.57 - - - 0.82 - - - - - - - - -
Cpa|evm.model.tig00020936.12 (tig00021761_g23440.t1)
- - 2.17 - - - - 2.39 - - - 3.61 - - - - - 2.03 - - - - - - - -
Cpa|evm.model.tig00020936.14 (tig00020941_g16203.t1)
- - - - - - 3.65 - - - - 3.75 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020952.36 (tig00020849_g14656.t1)
0.44 -0.16 -0.04 0.96 0.21 0.12 0.48 0.51 0.19 0.3 1.22 1.88 1.27 -0.88 -0.97 0.19 -0.41 -3.45 -3.22 -0.53 -2.72 -3.26 -2.52 - -2.48 -0.94
Cpa|evm.model.tig00020952.37 (tig00021013_g17049.t1)
-0.09 0.47 - -0.03 0.17 0.62 0.04 0.34 0.84 0.49 -0.06 1.41 1.38 -1.6 -2.1 0.99 0.52 - -2.09 -0.16 -2.95 - - - 1.44 -1.44
Cpa|evm.model.tig00021013.19 (tig00021013_g17049.t1)
0.22 0.4 -0.43 0.86 -0.5 -0.3 -0.29 0.77 0.57 0.4 1.93 1.97 1.47 -2.63 -1.86 0.06 - -0.71 - -0.31 -1.62 -3.68 - - -2.0 -3.9
Cpa|evm.model.tig00021013.21 (tig00020849_g14656.t1)
0.49 -0.15 -0.82 0.66 0.21 -0.85 0.19 0.57 0.34 0.5 0.91 1.36 0.86 -0.13 0.49 1.15 0.45 -1.18 -2.24 0.44 -4.61 -3.72 - - -4.87 -2.18
Cpa|evm.model.tig00021013.6 (tig00021013_g17037.t1)
1.35 - - - - - - 1.86 - - 2.64 2.76 - - - - 1.88 - 1.64 - - - - - - -
Cpa|evm.model.tig00021015.22 (tig00000455_g1039.t1)
- - - - - - - - - - 4.7 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021017.35 (tig00000663_g2982.t1)
2.13 - - 2.52 - - - - - - 3.37 - - 0.26 0.76 - - - - - - - - - - 1.43
Cpa|evm.model.tig00021035.30 (tig00020943_g16259.t1)
- - - 1.72 - - 1.85 - - - - - 2.04 - - - - - - 2.91 0.7 - - - 2.55 -
Cpa|evm.model.tig00021035.31 (tig00021035_g17266.t1)
- - 2.83 2.55 - - - - - - - 3.71 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021036.101 (tig00021036_g17389.t1)
- - - - - - - - - - - 3.9 - - - - - - - 3.47 - - - - - -
0.39 -0.37 0.17 0.87 0.87 0.76 -0.74 0.79 0.39 0.74 1.31 1.97 1.44 -2.56 -2.05 -3.41 -1.33 -0.65 -1.61 -1.12 -3.24 - -1.41 -3.65 -2.64 -
Cpa|evm.model.tig00021045.8 (tig00021045_g17658.t1)
- - - - - 3.12 - - - - 3.03 3.19 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021070.56 (tig00021070_g17860.t1)
0.53 1.16 -1.51 -0.66 - 0.02 -1.28 -0.61 -0.72 -0.85 0.55 2.54 2.04 1.27 -1.82 - - 0.03 -0.29 -1.11 - -0.55 -0.81 - - -1.16
Cpa|evm.model.tig00021072.45 (tig00021072_g17998.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021098.24 (tig00021098_g18193.t1)
1.1 - - - 1.3 1.41 - - - - - - - - - - - 0.65 - - 2.54 1.15 2.32 1.3 0.73 -
Cpa|evm.model.tig00021108.53 (tig00000180_g13644.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021111.10 (tig00021108_g18356.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021111.11 (tig00020629_g12491.t1)
1.14 0.53 - -0.43 -1.55 -1.2 1.7 0.77 1.06 1.7 2.26 0.46 0.91 -0.81 - - -1.48 -1.11 0.2 - - - - - - -
Cpa|evm.model.tig00021244.10 (tig00021244_g19569.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021275.27 (tig00021275_g19887.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021281.23 (tig00000178_g12809.t1)
2.93 - - - - - 3.24 - - - 3.16 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021290.24 (tig00021248_g19615.t1)
- - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021326.12 (tig00021326_g20275.t1)
1.29 0.89 -0.21 1.33 1.39 -1.58 -0.17 -0.67 0.16 0.78 1.83 -1.62 -0.87 -1.37 -0.3 - - -0.5 - -0.94 -0.21 -2.97 -2.09 0.7 -0.36 -0.92
Cpa|evm.model.tig00021351.1 (tig00000310_g23923.t1)
- 1.58 - 1.52 - - 1.65 - 1.57 - 1.37 3.13 - - - - - - 1.43 - - - - - - -
Cpa|evm.model.tig00021441.22 (tig00021441_g21563.t1)
- - - 3.13 - - 3.06 - - - - 3.16 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021462.36 (tig00021462_g21599.t1)
- - - - - - - - - - 3.98 - - - 2.64 - - 1.98 - - - - - - - -
Cpa|evm.model.tig00021493.71 (tig00020660_g12501.t1)
- - - - - - - - - - 4.7 - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021504.11 (tig00021504_g21974.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021579.5 (tig00021579_g22427.t1)
- - - - - - 0.95 2.15 0.93 1.84 1.87 - 2.77 - - - - - 0.87 0.86 - - - - - -
Cpa|evm.model.tig00021587.3 (tig00000586_g2244.t1)
- - - - - - - - - - - 4.7 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021680.9 (tig00021680_g23030.t1)
- - - - - - - - 2.71 2.6 2.65 2.83 - - - - - - - - - - - - - -
Cpa|evm.model.tig00021745.16 (tig00021745_g23360.t1)
1.54 - 0.2 - - 0.88 -0.6 0.22 1.23 2.1 1.94 1.88 1.87 - - - - - - - - -1.06 - - - -
Cpa|evm.model.tig00021745.21 (tig00020616_g12295.t1)
- - - - - - - - - - 3.79 - - - 2.73 - - - 2.46 - - - - - - -
Cpa|evm.model.tig00021758.20 (tig00021358_g20807.t1)
2.66 - - 2.5 - 1.45 1.0 - 0.59 - - - 0.94 - - 0.69 - - - - - - - 0.96 1.2 -
Cpa|evm.model.tig00021758.21 (tig00000802_g4272.t1)
- 1.99 -0.35 - 0.12 - 3.01 - - -0.63 - 2.33 0.31 - - 1.97 - - -0.94 - -1.57 - -1.24 - - -
Cpa|evm.model.tig00021763.11 (tig00021763_g23516.t2)
- - - - - - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.