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Heatmap: Cluster_147 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
Cpa|evm.model.tig00000042.258 (tig00000042_g15660.t1)
 - - - - - - - - - 0.59 - - - 0.54 1.46 3.95 - 0.17 - - 0.27 - 1.33 - - -
Cpa|evm.model.tig00000056.4 (tig00000056_g24048.t1)
 - - - 2.41 - - - - - 2.22 - - - - - - - - - 3.11 - 1.94 - - - 1.83
Cpa|evm.model.tig00000057.147 (tig00000057_g170.t1)
 - - - - - - - 1.1 1.13 1.03 - 2.18 1.48 - - 2.06 - - 1.73 - - - - 0.98 - 1.5
Cpa|evm.model.tig00000189.60 (tig00021531_g22181.t1)
 - 0.79 - - - - 1.42 - - - 1.14 - - - 1.12 3.17 3.03 - - - - - - - - -
Cpa|evm.model.tig00000219.82 (tig00021720_g23196.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000246.29 (tig00000246_g21522.t1)
 - - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
Cpa|evm.model.tig00000431.5 (tig00000431_g671.t1)
 - - - 0.08 2.29 0.25 - 2.13 1.09 0.9 0.01 - 1.4 - - 2.34 - - -0.0 - - - -0.37 - - -
Cpa|evm.model.tig00000443.13 (tig00000443_g769.t1)
 - - - 2.3 - - 0.64 2.24 - - 1.6 - 1.07 3.27 - - - - - - - - - - - -
Cpa|evm.model.tig00000445.1 (tig00000445_g834.t1)
 - - - - - - - - - - - - - - - - - - - - - 3.85 - - - 3.53
Cpa|evm.model.tig00000492.112 (tig00000492_g1506.t1)
 - - - - - - - - - - - - - - - 3.4 - - 3.06 - - - - - - 2.84
Cpa|evm.model.tig00000586.8 (tig00021122_g18435.t1)
 - - - - - - - - - 2.27 - - - 4.4 - - - - - - - - - - - -
Cpa|evm.model.tig00000806.4 (tig00000806_g4330.t1)
 2.58 2.03 - - - - - - - - 2.38 - - - - 3.43 - - - - - - - - - -
Cpa|evm.model.tig00000829.39 (tig00000829_g4682.t2)
 - - - - - - - - - - - - - 4.25 - - - - 2.06 - 1.48 - - - - -
Cpa|evm.model.tig00000850.5 (tig00000850_g4793.t1)
 1.44 - - - 1.64 - - - 1.43 - - - - - 2.19 0.92 0.18 -0.76 2.25 - - -0.41 - 1.21 - 0.56
Cpa|evm.model.tig00000946.4 (tig00000946_g5562.t1)
 - - - - - - - - - - 2.49 - - 2.36 - 2.42 - - 2.45 - - - 2.15 - - -
Cpa|evm.model.tig00001220.5 (tig00001220_g7619.t1)
 - - - - - - - - - - - - - - - 3.73 - - - 3.67 - - - - - -
Cpa|evm.model.tig00001250.3 (tig00021127_g18818.t1)
 - - - - 1.35 - - - - - - - 1.85 - - 3.07 - - - 2.37 1.51 - - - 1.78 -
Cpa|evm.model.tig00001327.6 (tig00000145_g8858.t1)
 - - - - - - - - - - - - - 4.05 - - - - - 3.25 - - - - - -
Cpa|evm.model.tig00020516.13 (tig00020516_g9961.t2)
 - - - - - - - 1.71 1.63 - - - - 1.85 - 1.48 - - - 2.93 0.56 1.11 - - - 1.0
Cpa|evm.model.tig00020553.219 (tig00020553_g10709.t1)
 - - - - 2.99 - - - - - 2.81 - - - - 1.78 - - - - - 2.4 - - - 1.22
Cpa|evm.model.tig00020553.92 (tig00020553_g10584.t1)
 - 0.43 0.29 - 1.78 - - - - 0.21 - - - - - 2.27 - 0.65 1.22 - 0.91 - 1.32 - 1.96 0.87
Cpa|evm.model.tig00020563.12 (tig00020563_g11195.t1)
 - - - - 2.75 - - - - - - - - - 3.22 2.84 - - 0.63 - - - - - 0.36 -
Cpa|evm.model.tig00020592.68 (tig00020592_g11702.t2)
 - - - - - 2.79 - - - 2.78 - - 1.0 - 0.48 2.87 - - 0.56 - - - - - - -
Cpa|evm.model.tig00020608.3 (tig00020608_g11924.t1)
 - 2.77 - - - - 2.84 - - - 2.56 - - - - 2.61 - - - - - - - - - -
Cpa|evm.model.tig00020703.11 (tig00020703_g13112.t1)
 - 2.66 0.68 - - - - 0.9 0.81 0.57 2.44 0.79 - - - 0.67 - 0.09 1.65 - - - - - - -
Cpa|evm.model.tig00020781.6 (tig00020782_g13704.t1)
 - - - - - - - - - - - - - 4.18 - - - - 2.99 - - - - - - -
Cpa|evm.model.tig00020786.7 (tig00020786_g13713.t1)
 -1.17 1.08 1.64 - -2.53 -1.09 -2.32 -1.71 -1.38 -2.55 -1.38 -3.34 -1.59 -0.61 2.84 2.67 -1.14 -0.41 -0.33 -2.52 -2.4 -1.63 -1.35 -3.53 -1.98 -2.3
Cpa|evm.model.tig00020796.4 (tig00020796_g13719.t4)
 - - -0.41 - - 1.81 - - - - - - - 4.14 0.5 - - - - 1.44 - - - - - -
Cpa|evm.model.tig00020816.143 (tig00021745_g23358.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020828.14 (tig00020829_g14374.t1)
 - - - 2.41 0.03 2.61 0.34 0.54 1.78 0.28 - - - - - 2.31 0.3 - - - - - - - - -
Cpa|evm.model.tig00020848.10 (tig00020848_g14535.t1)
 0.27 -0.09 -2.54 0.57 0.1 0.11 -0.25 0.18 0.6 -0.45 -0.56 -0.86 0.01 1.97 -0.37 -0.05 -1.45 -0.94 0.08 -1.01 -1.29 0.12 -0.44 -2.94 0.84 0.44
Cpa|evm.model.tig00020951.3 (tig00020951_g16398.t1)
 - - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
Cpa|evm.model.tig00021012.4 (tig00021012_g16983.t1)
 -0.46 0.06 0.1 0.27 -0.05 -1.22 -0.76 1.37 1.33 -0.89 -0.83 -1.26 -0.96 0.69 -1.45 1.99 0.44 -1.95 1.06 0.81 -0.76 -1.12 - - -1.43 -
Cpa|evm.model.tig00021017.58 (tig00020851_g14725.t1)
 1.81 - - - - 2.78 2.03 - - 1.71 - - 2.26 - - 1.8 - - - - - - - - - -
Cpa|evm.model.tig00021036.61 (tig00021036_g17339.t1)
 2.32 - - - - - - 1.65 1.67 - 2.6 - - - - 1.61 - 2.48 - - - - - - - -
Cpa|evm.model.tig00021036.89 (tig00021047_g18149.t1)
 - - - - - - - - - - - - - - - 3.76 - 3.63 - - - - - - - -
Cpa|evm.model.tig00021038.26 (tig00021038_g17516.t1)
 3.58 - - - - - - - - - - - - - - - - - 3.81 - - - - - - -
Cpa|evm.model.tig00021099.1 (tig00021099_g18215.t1)
 - - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
Cpa|evm.model.tig00021108.3 (tig00021108_g18289.t1)
 - - - - - - - - - - - 3.41 - 3.15 - - - - - - - - - - 2.7 -
Cpa|evm.model.tig00021221.4 (tig00021221_g19344.t1)
 - 2.13 - - 2.18 1.9 - - - - - 2.09 - - - 1.97 - - - - - - 1.33 - - 1.42
Cpa|evm.model.tig00021247.16 (tig00000525_g1970.t1)
 - - - - - - - - 2.89 - - - - 3.6 - - - - 2.69 - - - - - - -
Cpa|evm.model.tig00021326.24 (tig00000145_g8849.t1)
 - - - -0.25 1.28 - - - - 2.71 - - - - -0.46 2.95 0.03 - 1.03 1.0 - - - - 1.44 -
Cpa|evm.model.tig00021337.4 (tig00021337_g20363.t1)
 - - - - - - - - - - - - - 3.7 - 2.85 - - - 2.54 - - - - - -
Cpa|evm.model.tig00021440.2 (tig00021741_g23277.t1)
 - - - - 2.18 - - - - 1.16 - - - 2.92 1.19 2.26 - - 2.2 - - - - - - -
Cpa|evm.model.tig00021493.72 (tig00021036_g17350.t1)
 1.79 -1.22 0.3 -3.36 2.47 -1.14 -1.07 -0.08 -1.77 -1.0 -0.71 2.14 -0.72 -2.44 -0.46 1.65 - -1.07 -0.08 -4.7 -2.19 - -3.45 - -0.0 -3.29
Cpa|evm.model.tig00021536.9 (tig00021535_g22210.t1)
 - - - - 1.59 0.53 - 0.51 - - 1.55 - - 0.46 2.83 2.6 - - - 0.54 - - 0.25 - - -
Cpa|evm.model.tig00021571.27 (tig00021571_g22371.t1)
 - - - - - - - - - - - - - 2.66 - 2.71 - - 2.75 - - - 2.68 - - -
Cpa|evm.model.tig00021741.1 (tig00021439_g21489.t1)
 - - - - - - - 0.07 - 2.06 - - - 1.69 1.93 3.36 - - - -0.52 - 0.46 - 0.46 - -
Cpa|evm.model.tig00021758.22 (tig00021758_g23416.t1)
 - - - 0.91 - - - - 0.88 0.78 - - 1.27 - - 1.81 - 0.68 - - 1.39 - 1.45 2.01 - 1.86

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.